| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1109 |
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| Symbol | |
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| ID | 5611908 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1321140 |
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| End bp | 1322198 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931958 |
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| Product | hypothetical protein |
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| Protein accession | YP_001472848 |
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| Protein GI | 157374248 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4753] Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATGAAT TGCAGCATTT TTTGTCATCT ATCGCTTTCT CTCAAATGCT TATCTGTAGT
CTGTTACTGC TCCCTCAATG GAGAGAGAAT CACTCCGTTC GCCTGTTTAT TCTGCTGATG
TTAGCCAGCT CCTGCTACCT GCTTGGCGAG GTGCTCGAGC CCGCCAGCCT ACACTCACCC
CTTTGGTGGA TTGAGCTCAT CGGTGGCAAT GCGCTACCCG GTCTGTTCTG GCTTGTTAGC
CTAAGTGTTT TCGGAGAACA TATTGTGCTT AGGAGGTGGC AATATGCCTT AGCATCACTC
ACCTTAGTCA TTCCGTTAAG TGTCAAACTG CTGGAAATTA CCTTCTCATT TAAACTAAAC
ACCTCCGTTG CCTTCAATGG TTTTATTCAC TACGGTTCAC TGCTGCTAGA GCTGATGCTT
ATCAGCCATG CACTGTTAAT CGCAGCGCAG CAGTTACGGG ACGATCTGGT TCAAAACAGA
CGCTATATTC GTGGCGCAGT GATCACCCTA TCGGCAATCT ACATCTTTCT TGTGATCTTA
ATTGAGCAAA CCTTCAGAGT TCAGTGGGCC GGACTCGATC TGCTTAAGGG GGCAGGTCTT
GCCCTATTGA TGACGGGAAT AAACTTTTTC CTGTTTCGTC TGCGCGAATC GAGCCTGTTT
GAAACAGAAA AACCAAAGGA GCAGCCGACA GAAATTCAGA GCAAGCCGCC ATCTAAGGAG
CTGGAGCAGA TCCTCAACGC GATGACCGAA GATAAGCTCT ATCAACAGGA GGGGATCACC
ATTGCCACAT TAGCCAAACA TCTCTGCATC CACGAATATA AGCTGCGACA TCTGATCAAT
CGCGAAATGA ATTTCCGCAA CTTTAATGAT TTTCTCAACC ACTACCGCAT CAAAGAGATC
ACCGGGAAAC TTGAACAGAG TGAGTTCAAT CAAACTCCGG TGTTAACCCT GGCATTAGAG
AGTGGTTTCA GAAGTTTAAG CTCATTTAAT AAGGTATTTA AGACGACCCA TCAGCTCACT
CCCACCGAAT ACCGTAAAAG AGCAATCGCT AACGCTTAA
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| Protein sequence | MYELQHFLSS IAFSQMLICS LLLLPQWREN HSVRLFILLM LASSCYLLGE VLEPASLHSP
LWWIELIGGN ALPGLFWLVS LSVFGEHIVL RRWQYALASL TLVIPLSVKL LEITFSFKLN
TSVAFNGFIH YGSLLLELML ISHALLIAAQ QLRDDLVQNR RYIRGAVITL SAIYIFLVIL
IEQTFRVQWA GLDLLKGAGL ALLMTGINFF LFRLRESSLF ETEKPKEQPT EIQSKPPSKE
LEQILNAMTE DKLYQQEGIT IATLAKHLCI HEYKLRHLIN REMNFRNFND FLNHYRIKEI
TGKLEQSEFN QTPVLTLALE SGFRSLSSFN KVFKTTHQLT PTEYRKRAIA NA
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