| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1107 |
|---|
| Symbol | |
|---|
| ID | 5611906 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1319016 |
|---|
| End bp | 1320269 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640931956 |
|---|
| Product | cytochrome-c peroxidase |
|---|
| Protein accession | YP_001472846 |
|---|
| Protein GI | 157374246 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1858] Cytochrome c peroxidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.63501 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.861161 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGCCA TCATCAATAT CATCTCACTC GCTACATTAG CTCTTACACC CGGTGTCCTC
CTGGCGCTAG AGGCTCAGGA GGTAGAGCTG CAAGGTACGC CGTTTACTCT GGCAGAGAGC
TGCCCCCCCA GTTTTGAGTT GATCAAAGAG GAGGAGGAGA AGGATCGCTG CCGCCTGGTC
AATCAATATC AATTTTATGA CTCGGTTCAG GGGCGCGGAC TTGGGGGTAC TCAAACTTCA
CTGCCCAGAC ACAGAGATGG CTTCACTCCC GAGCAGATCG ATCTCGGCCG ATACCTGTTT
TTCGATCCGC TACTGTCAAA AGATGGTTCA ATCTCCTGCG CCAGCTGTCA CCAGCCGGAA
AAGGGATTCA GCGACGATCT GGACAGAAGC ATAGGAATTA CAGGTGAGAA AGTCGGCCGA
GGGGCTCCGA CACTGTGGAA CGTCGCCTTT CTGGACAAGT TCTTCTGGGA TGTGCGTGCA
AAGACCCTGG AGGAACAGGC CCAGGGACCG CTGTTTGACC CGGGCGAGAT GGGCAATACG
CCCGAGAATC TACTGCAAAC CCTGAGGGAG AATGGCAGCT ACCCTTCAAT GTTTGCTCAG
GCCTTCCCGG AAGCTTCCCG GTTAGAACTT TCACAGGTCT ATACTGCGAT AACCGCCTTT
CAGACGACAC TTATCTCACT CAACAGTCGC TATGATCGCT ACGCCCATGG CTATCACGAA
GCACTGACGG AGAATGAGAT CTTAGGGTTG AATGTATTTC GATCCTTCGT CGCCAGATGC
GCCGAGTGCC ACCAGCCTCC TCTGTTTACT AATAATCAGA TAGCCGTAAT AGGCACCCCT
GAGCCGCAAG GTCGTGCGCT CGACATAGGT GCAGAGAAAA CCTATGACGC ACCAAAACTT
CGTGGCGCCT TTAAGGTTCC AACACTAAGA AATATCACAA AATCTGCCCC GTACATGCAC
TCGGGGCGAT ATAGCAAACT CAGAGATGCG GTCAAATTTT ATAACGATGG ACGTGGCAAC
TCGATACCGG ATGGGGAGAG TATGTTACTG CACTGGCATA TCTCTGAGCC CGATCTCACC
GATGATGAGC TGGACCGTAT TGTCGACTTT CTCGGCGCAT TAACTGACGA GAGCCTCACC
CCTAAAGTTC CACAGGCGGT CCCATCGGGA CTCGCGGTAA TCGATGAAAA ATACCAACAG
GAAAAAATAA AACAAAACCC GAGCAGTAAA ACTAAAAATC AGAGCGGAGA ATAA
|
|---|
| Protein sequence | MRAIINIISL ATLALTPGVL LALEAQEVEL QGTPFTLAES CPPSFELIKE EEEKDRCRLV
NQYQFYDSVQ GRGLGGTQTS LPRHRDGFTP EQIDLGRYLF FDPLLSKDGS ISCASCHQPE
KGFSDDLDRS IGITGEKVGR GAPTLWNVAF LDKFFWDVRA KTLEEQAQGP LFDPGEMGNT
PENLLQTLRE NGSYPSMFAQ AFPEASRLEL SQVYTAITAF QTTLISLNSR YDRYAHGYHE
ALTENEILGL NVFRSFVARC AECHQPPLFT NNQIAVIGTP EPQGRALDIG AEKTYDAPKL
RGAFKVPTLR NITKSAPYMH SGRYSKLRDA VKFYNDGRGN SIPDGESMLL HWHISEPDLT
DDELDRIVDF LGALTDESLT PKVPQAVPSG LAVIDEKYQQ EKIKQNPSSK TKNQSGE
|
|---|
| |