| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1026 |
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| Symbol | |
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| ID | 5609839 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1221879 |
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| End bp | 1222658 |
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| Gene Length | 780 bp |
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| Protein Length | 259 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931874 |
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| Product | ROK family protein |
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| Protein accession | YP_001472765 |
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| Protein GI | 157374165 |
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| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
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| COG ID | [COG1940] Transcriptional regulator/sugar kinase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.410563 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0366064 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAAACAA TAACGGTCGA TATCGGTGGT ACCACAGCAT TATTTGAGAT GCATCTTGAT
GGTCGAGTCG AGCAGTATAA AATTGCTACG GGTGACGGGT TTAATATCGA TAGCCTTAAT
CAGCACTTAA CGGAGTTAGA GTCTGATTAT GGATTTAGCG AGTATGGGCT GGCGATAGCT
CTGCCTGGAC TGGTTCAAAA TAACCGACTG CTGTCGAGCA GGTCTCTGCC GAGGCTAAAT
GGCTTATCCC AAGTCGATAT CTTGAGCCGA GCGAAGAACA TTGTTATTTC AAATGATATC
GATGCCGGCA TACAGGCTGT TAGCGATCCT AAGCACCCAT GTGAATTGTT GATCATGAGT
GGTAGCGGGA TCGGGATGTC CATTGCCATG AATGGTAAAC TGTTTACCGG GGCATCCGGT
GTAGCAGGAG AGTTAGGGCA TTGCCGGGTG ATGACTGAAT CCGGTGAGTT TAGCCTGGAG
CAACTTGCCA GTGGCACCTC TGTTGGGACG CGCGGGCTTA AATCATCCAG CGAGCTGTTT
CGCGCCGGAA GTTATCTGGG GATGGGGATA GCCTGGTCGG TGAACCTGTT TAACCCTAAT
CGCATATGGC TTGCCGGTGG CATGATGAAC AGCGACGATT ATTATAAAGG TTGTATCAGC
GCACTCAATA ATATGGCGCT AACCGCTCCC TTGTCTCAAG CAAAAGTATC ACGTGTTCAT
GATATGGAAA CCTTAGTGTG TCGAGGCCTG AAGAAGCTGC TCGCACAATC AGGGGATTGA
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| Protein sequence | MQTITVDIGG TTALFEMHLD GRVEQYKIAT GDGFNIDSLN QHLTELESDY GFSEYGLAIA
LPGLVQNNRL LSSRSLPRLN GLSQVDILSR AKNIVISNDI DAGIQAVSDP KHPCELLIMS
GSGIGMSIAM NGKLFTGASG VAGELGHCRV MTESGEFSLE QLASGTSVGT RGLKSSSELF
RAGSYLGMGI AWSVNLFNPN RIWLAGGMMN SDDYYKGCIS ALNNMALTAP LSQAKVSRVH
DMETLVCRGL KKLLAQSGD
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