| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1000 |
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| Symbol | |
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| ID | 5610054 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1183639 |
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| End bp | 1185171 |
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| Gene Length | 1533 bp |
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| Protein Length | 510 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931848 |
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| Product | major facilitator transporter |
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| Protein accession | YP_001472739 |
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| Protein GI | 157374139 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3104] Dipeptide/tripeptide permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGACT CAAAAGATGC TTACGCAGGT AATGACCTGC GAGAAGTCAA GCAGCTGGGT
ATGTGGGCCT CCATTGCCAG CTTAAGTTAC ATTTTCTGGA TTGTCGGCGG CATGGAGCTC
GTTGAGCGAA TTGCTTACTA CGGCGTAAAA GCCAGTGCCG GTCTTTATGC TAAAGCACCA
GTTTCTGAGG GTGGCTTAGG AATAAGCCTG AACGACTACG GTATCATTAT CGCTCTCTGG
GCCATGATGC AGACCTTTGT CCCGGTATTT ACCGGCGGGA TCTCCGATAG AGTCGGTTAT
AAAGAGACCA TCTTTGCCTC CACCTTAATC AAGATCTCCG GCTATTTAGT GATGGCCTTC
TTCCCTAGCT TCTATGGTTT CCTGTTCGGT GCCATATTAC TCGCTGGAGG TACTGGTATT
TTTAAACCCG GTATTCAGGG AACCCTGGTA CTTTCCACAG GCAGACAGAA CACCTCCATG
GCTTGGGGCA TCTTCTATCA GGTGGTCAAT ATTGGTGGCT TCCTTGGTCC TCTGGTTGCC
GTGCATATGC GCCAACTTTC CTGGGATAAT GTCTTCTACG CTTGTGCGGC GATAATCTCC
TTCAACTTCC TCTTTCTACT CGCCTATAAA GAGCCGGGAA AAGAGGAGCG ATTGGAGCGC
AACCGCAAAA TAAAATCCGG TGAAATTCAG CAACAGGCAC TGTGGCGAGA TGCACTGCAT
GAGCTTAAAA AGCCGGTGGT TATCTACTAT ATGCTGGTAT TTGCCGGTTT CTGGTTCCTG
TTTAATTCAC TCTTCGATGT ACTCCCAATC CATATCGCCG AATGGGTCGA CACCAGCGTC
ATCGTCACAT CCCTGTTTGG TCCGGAGGGC ACCTCAAATG GTTTCTTCCA ATTTTGGCTG
GGACTGGACA ACACAGGAAC TAAGGTGATG CCGGAAGGCA TGCTCAACCT CAATGCGGGT
ATGATCATGA CGACCTGCTT CCTGGTCGCG GCATTAACCG CTAAATACCG CATCACCACT
GCTATGCTTG GTGGCTGTCT GCTGAGTATT TTCGCCTTCG TGTTAGTGGG TGCAACCAAT
GCGGCCTGGA TGATAGTACT GGCCATTGCC ATGTTCTCTT TTGGTGAGAT GATGATCAGC
CCCAAGAAGA ATGAGTTTAT GGGTAACATT GCACCGGAAG GCAAGAAAGC CATGTATCTT
GGCTTTGTCA TGTTACCCCA GGGCATCGGC TGGACACTTG AAGGCTATTT TGGTCCTAAA
CTCTATGAGA TGTATGCCTC GAAAGAGATC TTCTCTCTGG ATCTATTGTC AGAGCGTGGC
ATGAGTGCTG CCGAGGTGAG TGCCATCCCG CAGGGTGAGG CCTTCAGTAC ATTGGTCGCC
TATACCGGCG AACCAGCTCA AGAGCTGACG ACCTTGTTAT ATAACACCCA TAACATAGGT
ATGGCCTGGT ACATCATTGC TGCAATTGGC ACCATATCTG CCGTGGGGAT CTATCTATAT
GGAAAGTGGT TGCTGAAACT GCAACGAGCT TAA
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| Protein sequence | MSDSKDAYAG NDLREVKQLG MWASIASLSY IFWIVGGMEL VERIAYYGVK ASAGLYAKAP
VSEGGLGISL NDYGIIIALW AMMQTFVPVF TGGISDRVGY KETIFASTLI KISGYLVMAF
FPSFYGFLFG AILLAGGTGI FKPGIQGTLV LSTGRQNTSM AWGIFYQVVN IGGFLGPLVA
VHMRQLSWDN VFYACAAIIS FNFLFLLAYK EPGKEERLER NRKIKSGEIQ QQALWRDALH
ELKKPVVIYY MLVFAGFWFL FNSLFDVLPI HIAEWVDTSV IVTSLFGPEG TSNGFFQFWL
GLDNTGTKVM PEGMLNLNAG MIMTTCFLVA ALTAKYRITT AMLGGCLLSI FAFVLVGATN
AAWMIVLAIA MFSFGEMMIS PKKNEFMGNI APEGKKAMYL GFVMLPQGIG WTLEGYFGPK
LYEMYASKEI FSLDLLSERG MSAAEVSAIP QGEAFSTLVA YTGEPAQELT TLLYNTHNIG
MAWYIIAAIG TISAVGIYLY GKWLLKLQRA
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