| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0917 |
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| Symbol | |
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| ID | 5614241 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1097735 |
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| End bp | 1098694 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931765 |
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| Product | WD-40 repeat-containing protein |
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| Protein accession | YP_001472656 |
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| Protein GI | 157374056 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2319] FOG: WD40 repeat |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000268959 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0477605 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAAAAA TCTTTACGCT TGTTTTTTGT ACTCTGCTCA TCACCGCCTG TCAGCCAAAA
GCCTTACAGA CTCATCAGTT AATTACTGAG CCCAGCTACG ATGCGAGCTT GTCAGAGCAA
GGTGATCTGG CCCTGGTAAG TACCGCCAAC AGCGGCTTGC AATTATGGGA TCTGAAAACC
AATCAACAAA GGTTTACCTG GATCCACGGA GAAGCCAACA ATAGCGCCGT AGACACCTCA
ATATCGCCAA ATCAGGCGTT CGCCGCCTCT CTGAGTAGAA GCTCAGTCGC ACTTTGGAGA
ATTTCCGATG GCAGTTCTCA AGGTTGGTGG TCATTGCCCT CCTCGGGCCA GAGTGTGGCC
GTAGCTAATA ACGGTGCACT ACTCATTGGC CTCAACGATG GCAGCGTCAT GTCACTTCGC
CCTAATGGCG GCTCACTGAT AAAATTCCTT GGCCATACTG AAAAAGTTAA CAGCGTGTCA
CTTTCGGCCG ATGGCAGACT CGCCTTAACA GGCTCAAACG ATCAGCACGC TATCTTATGG
AATGCCACCA CAGGCCAACC GATACATGAC TGGCATCTCG ATAACCGCAT CATCAGCGTT
GCGTTGAATA AAGCCGGAAC CCTCTCTTTT ATCGGCGACA GTACTAAGAT AGCTAAGATT
ATTGACAATA AAAGCGGAGA GTCGATAAGT AAGTTAAAGA TCCTTCGCCG AAAAATGAAC
TTTTCAACGG CTCGATTCTC AAATCAAGAC ACCTTGCTAA TCACGGGAAC GCCTGCGAGA
GAGGTCATTG TATGGAATGT GCAAACCGGA CGAAAAATCG CCAACTGGCA AGTTCAACGA
ACCAAACGTG CCCAAATTAA GGGAGCCGTT GTATACTCTG TCGCAAACAG CGATCCGAAT
CAGATCATCA GCATTAGCAG TAATGGCCTT GTCGAGACCT GGCCAGTACC TGTCCATTAG
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| Protein sequence | MKKIFTLVFC TLLITACQPK ALQTHQLITE PSYDASLSEQ GDLALVSTAN SGLQLWDLKT
NQQRFTWIHG EANNSAVDTS ISPNQAFAAS LSRSSVALWR ISDGSSQGWW SLPSSGQSVA
VANNGALLIG LNDGSVMSLR PNGGSLIKFL GHTEKVNSVS LSADGRLALT GSNDQHAILW
NATTGQPIHD WHLDNRIISV ALNKAGTLSF IGDSTKIAKI IDNKSGESIS KLKILRRKMN
FSTARFSNQD TLLITGTPAR EVIVWNVQTG RKIANWQVQR TKRAQIKGAV VYSVANSDPN
QIISISSNGL VETWPVPVH
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