| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0890 |
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| Symbol | |
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| ID | 5613620 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1061964 |
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| End bp | 1063190 |
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| Gene Length | 1227 bp |
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| Protein Length | 408 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931738 |
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| Product | ATP-dependent RNA helicase SrmB |
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| Protein accession | YP_001472629 |
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| Protein GI | 157374029 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0724766 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATTTG AAGACCTCCT GCTTGACCCT ATTTTACTAG AGTCATTGAA AGCCATGGGC
CATCACAAGC CTACCACCAT ACAGCAACAA GCGATCCCAT TGGCCATGGA TCAGCGGGAC
ATTCTTGCGC GTGCACCGAC AGGTACAGGT AAAACTGCCA GCTTCCTGTT GCCGGCACTT
CAGCATCTTA TCGACTTCCC GAGACGCTTT TCAGGTCAGG CCCGAATCCT GATATTGACT
CCAACACGTG AACTCGCGAG TCAAATCCAC AGATATGCCT CTCATCTGGC TTCCGAATTG
GATTTCAATA CCGTCATCAT CACAGGCGGA GTGCCTTACG GGCCTCAAGA GGATGCACTG
AAAGGTAACG TCGATATTCT GGTGGCGACA CCTGGCCGCC TGATGGAATA CCTCGACAAG
GGTCAGTTTA ATGCCGAAGA GGTCGAAATG CTGGTCATCG ATGAAGCCGA CAGAATGTTG
GATATGGGCT TCTCTGCCGC AGTCGAAACC CTAGCTATCG AGTCAGTGGG CCGTAAACAG
ACCATGCTGT TCTCAGCCAC GCTAGAGGGC AGTGACGTAG GCCGCTTCTC TCATCAACTG
CTGACAGACC CGGTAAAAGT TGAAGCCGAA GCACCGCGCA GTGAAAAGGC AAAGATACAT
CAGTGGATCC ATATCGCCGA CAATAAAGAC CATAAATTCA ATCTGTTATG TAGCATATTG
CAACAAGAAG AGACAAAGCG TGCCATCGTC TTCGTTAAGA CTCGAGAAGC GGTCGCTAGC
CTGGAGGGTT TACTGCAGAA AGCCGGTATT CCATGTAGCT TTATGCGTGG CGATATGGAG
CAGAAGCAGC GCTTCCAAGC CCTCGGACGT TTCACTAAAG GTGAAGTGAA TGTGTTATTG
GCTACCGATG TCGCCGCACG TGGTATCGAT GTCGATGACA TCACCCATGT GATCAATTTC
GATATGCCTA GATCTGCCGA TACTTATGTT CACCGTATCG GTCGTACCGG TCGTGCAGGT
GCGAAAGGCA CGGCAATATC TTTGGTCGAA GCCCATGACA TTCGCGTCGT TGGTAAGATT
GAACGCTACA TGGATCAGCC ACTTAAGCGT CGATTCATCA AAGATCTCAG ACCTAAAAAT
AAAGAAGCTA AGCCACCGGG AAAGAACAAA GTAAAACCGA CTGAAAAAAC TTTCAGCAAG
AAAAACAAAA AAAAGAAAAA AAAGTAA
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| Protein sequence | MQFEDLLLDP ILLESLKAMG HHKPTTIQQQ AIPLAMDQRD ILARAPTGTG KTASFLLPAL
QHLIDFPRRF SGQARILILT PTRELASQIH RYASHLASEL DFNTVIITGG VPYGPQEDAL
KGNVDILVAT PGRLMEYLDK GQFNAEEVEM LVIDEADRML DMGFSAAVET LAIESVGRKQ
TMLFSATLEG SDVGRFSHQL LTDPVKVEAE APRSEKAKIH QWIHIADNKD HKFNLLCSIL
QQEETKRAIV FVKTREAVAS LEGLLQKAGI PCSFMRGDME QKQRFQALGR FTKGEVNVLL
ATDVAARGID VDDITHVINF DMPRSADTYV HRIGRTGRAG AKGTAISLVE AHDIRVVGKI
ERYMDQPLKR RFIKDLRPKN KEAKPPGKNK VKPTEKTFSK KNKKKKKK
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