| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0889 |
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| Symbol | |
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| ID | 5613619 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1060372 |
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| End bp | 1061589 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931737 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001472628 |
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| Protein GI | 157374028 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.436675 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATAAAAA CAATACTCAG GAGATTAACT CCCCTCTATA TTCTTGTCTT TTTTGGCGTA
GCCGCTTGGC TTCTCATTAG TACCAAGGAG GCTCCTGAAC AGAAGGAGGA GCAGAAACCA
GTCCCAATCG TCGATGTGGT TAAAGTGGAG CAGAAAACAG TCTCCCTGAA CCTCCCATCA
TATGGTGTCG TCACTCCAAA GAACAAGACC CAACTGGTCA CAGAAGTGAA GGGACGTTTG
CTTACCATCT CTCCCAATTT TGTTGCCGGT GGTGTCGTGA AAAAGGGCGA ACAGCTTGCT
GCAATTGAAC CATCGGATTA TGAAGCAGAT CTCAATCAAG CCCAGGCCAG CTTGGCCCAA
GCGCAAGCAG CTTTAGAGGA GGAGATAGCC CGCGGTGAAG TGGCCAAGAA TGATTGGAAA
GGCTATGACG GTGGACTCCC GCCAGAGCTG GGGTTACGCC TGCCTCAACT CAAGAAAGAG
CAGGCAAACG TTAAATTTGC CCAAGCCTCA CTCGCACGCG CTAAGCGTAA CCTTGAAAGA
ACCGTTATTC GTGCGCCTTT TGAGGGGATC ATCAAGACAA GAATCGTAGA TCTGGGCCAA
TACGTGACTT TAGGCACTAA CCTGGGTGAG CTTTATGACA CTCGTATTGC CGAGATCCGT
CTGCCACTCG CCAATAACGA CCTTGCTTAT CTCGAATCGG TGGACAACCC GGATACTCAA
GTCACCTTAA GTGCATCTCT TGCCGGAAAA ACCGTGACCT GGACAGGAGA TATCATCCGT
AGCGAAGGGG TGATCGATGC CGAAAACCGT ATGGTTTATC TGGTTGCCGA AATTAAAGAC
CCTTACCTGA GAGAGGGGCG TAAAGAGGGA CAGCTACCAC TTAAATATGG CAGTTTTGTC
ACCGCTATCA TTAAAGGCCG CACCGTAGAT GGCATCGTTC AACTCCCTCG CCATATTGTC
CGTAATGGTC AGGTTGCCGT GATCTCAGCC GATAACATCG TTGAGGTTCG TGAAGTCAAT
GTCGTGCGTA CCGATGTCAA TAATGTTTAT ATTAAAGATA GCCTGCAAGA CGGCGAGCGT
GTCTCGTTAA CTAAGCTGAC AAATATTTCA TCCGGCCAAC TAGTCAAAAT ATTAGGTGAA
GCGAGTAAAA ATGGCACTAA TCTTCCCGAA AGCGATATTG CAAAAGAGCA GCGTTTAGCC
GCGGCGGGTG ATCAATAA
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| Protein sequence | MIKTILRRLT PLYILVFFGV AAWLLISTKE APEQKEEQKP VPIVDVVKVE QKTVSLNLPS
YGVVTPKNKT QLVTEVKGRL LTISPNFVAG GVVKKGEQLA AIEPSDYEAD LNQAQASLAQ
AQAALEEEIA RGEVAKNDWK GYDGGLPPEL GLRLPQLKKE QANVKFAQAS LARAKRNLER
TVIRAPFEGI IKTRIVDLGQ YVTLGTNLGE LYDTRIAEIR LPLANNDLAY LESVDNPDTQ
VTLSASLAGK TVTWTGDIIR SEGVIDAENR MVYLVAEIKD PYLREGRKEG QLPLKYGSFV
TAIIKGRTVD GIVQLPRHIV RNGQVAVISA DNIVEVREVN VVRTDVNNVY IKDSLQDGER
VSLTKLTNIS SGQLVKILGE ASKNGTNLPE SDIAKEQRLA AAGDQ
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