| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0882 |
|---|
| Symbol | |
|---|
| ID | 5613589 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1049876 |
|---|
| End bp | 1050700 |
|---|
| Gene Length | 825 bp |
|---|
| Protein Length | 274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640931730 |
|---|
| Product | cytochrome c, putative |
|---|
| Protein accession | YP_001472621 |
|---|
| Protein GI | 157374021 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.396055 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTATTA ACAGACGACA AGCATTAACA AAAATCATCG GTATCAGCAC AGCGGCCGCA
GGTGCGACGC TTATGGGTAC TTCGGCTTTC GCGGCGACAG ATGAAGCCGG AAACTACAAA
TTAGCGCTAA AAGAAACGCT CAAGTATGTG CCACTCGACC CAATGACAGC GGCTAAAATC
GCCTATGAAA CACCTGGTGG CTGTATGCAC CAAATTTTCC ACTCTCTTGT TACTATGTTA
GCCGACTCAG ATAGTGAAGA TAAAGCCAAG TTCGATTCTA TTCCAACGGC ACTGGCCGGA
TATGGTTGGG CAGGTATTAT TGGCCAGGGC ACCGTCTGCG GTAACATCAA CGCAACCGGT
ATGCTGGTGA ATATCCTTGG TGATATCAAT GGTCAAAATG GGGCGGTTAT CGGCTCATTA
TTCAGATACT ACGAGAATAC CGAACTACCT CTCTCATCTC CTGAGTTCGT CGCCGGTATC
GGCTCTACTG CCGAGAAGAC AACAGATGAA GTTGTCACCT CTTCTGTAGC AAACAGCATC
CTTTGTCACT CATCTATCAG TAACTGGTCT AAGGCTTCGG GCAAGACCTT CGCCCAGAAG
GGTGAGCGCT GTAAGCGTCT GTCGGCTTCT ATCGCCTACC ACCTTGTAGA GCTATTGAAC
CGCGCCTATG ACGGTGAGGA CCTGAGTGTC CTTCCTGAGG CTAAGCCTTC AGAAGAAGCA
CAAGCCTGTC AGAGTTGTCA CGGCGTAGAT TCAACGATGG GCTCAGCTGC CAGCGTTAAA
GCAGATATGG AATGTACAAC TTGTCATACT GGCCACTTCA ACTAG
|
|---|
| Protein sequence | MTINRRQALT KIIGISTAAA GATLMGTSAF AATDEAGNYK LALKETLKYV PLDPMTAAKI
AYETPGGCMH QIFHSLVTML ADSDSEDKAK FDSIPTALAG YGWAGIIGQG TVCGNINATG
MLVNILGDIN GQNGAVIGSL FRYYENTELP LSSPEFVAGI GSTAEKTTDE VVTSSVANSI
LCHSSISNWS KASGKTFAQK GERCKRLSAS IAYHLVELLN RAYDGEDLSV LPEAKPSEEA
QACQSCHGVD STMGSAASVK ADMECTTCHT GHFN
|
|---|
| |