| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0871 |
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| Symbol | |
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| ID | 5611445 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1035108 |
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| End bp | 1036838 |
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| Gene Length | 1731 bp |
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| Protein Length | 576 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931719 |
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| Product | thiamine pyrophosphate enzyme-like TPP binding protein |
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| Protein accession | YP_001472610 |
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| Protein GI | 157374010 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAAAAAA CCGCAGCCTG GCTTGTTCGT TATGCACTGG AGCAACTAAA TATTAAGTAC
ACCTTCGGTA TCCCTGGTGT GCATAACACT GAAATATATG ATGAATTGGC ACAATCTGAC
AGCATCGAAC CTGTGCTGGT GACCCATGAG GGCCATGGGG CCTTTATGGC CGATGCCGTC
AGCAGAAGCA GCGATAGTAC TGGTACATTA CTTATCGTTC CCGCCGCCGG AGCCACCCAT
GCCGCCAGCG GTATTGCGGA AGCGTCGTTA GATGGCATCC CTATGTTAGT CATCAGCGGC
GGCGTGAGAA CCGACTCGAA ATATTCCTAC CAGCTGCACG ACATGGATCA GCATAAGATG
CTCGAGCCCA TCACGAAAAA AACCTTTAAA GTGACTCGTC ATCAGGAGGT GGTAGCCACA
CTTTTTGAAG CCTTCAGACT TGCCAATGAT GGCGAACCCG GGCCTGTGTT TGTGGAGATC
CCCGTGAACC TTCAGCTCGA TAAGGGGGAG GTCTCAGACC TACCAGTCTA CCGGGCGCCG
GTAAAGTCAT TGAGTCATTC ACTCGATGCT CAATTGACTC AAGCGGTAAC GCTATTAGCT
AACGCAAAAA ATCCAGCCAT ATTTGTGGGG TGGGGGGGCG TAGAGACGAG TGGATGTACC
GAGCAGATTG CCGCCTTACT TGGCACTCCG GTTGCGACAA CCCTGCAGGG ACTCAGCGCA
TTCCCCGCCA AACATCCGCT TCATACCGGG ATGGGTTTTG GCCCCGCCGC GGTTCCGGCT
GCGACCAATG CCTTTAAAGC GTGTGATTGT CTGCTCGCCA TAGGTACCCG TTTTGCAGAG
ATTGGCACGG GAAGCTTTGG GGTGACCGTG CCGGAAAATC TGATCCATAT CGATATTAAT
CCGGACGTTT TTAACGCTAA TTACCCTGCC AAAGTTGCCA TCGAGGGAGA TGCGGGCGCA
GTGTTAGCCG CTTTGTTGGA GAAGCTCCAA AAAACGCATA TCAGGGCGAA AGATGCCGCT
GTCATTGAAC AGGCAATCAA GCGGGATAAG AAGAGCTATA TGGATGAGTG GTTAGCTCAC
GACAGTGGCG ACAGAGTCAA TCCGGGGGCA TTTTTTCAGC AGCTAAGAGC ATCGCTCGAT
GACGATGCCT ATGTGGTTGC CGATGACGGG AACCATACTT TTTTAACCGC CGAGCTCATG
CCTTGCTATC TTCCTAAGCA TTTTTTCAGC CCCACAGATT TTAACTGTAT GGGTTATGCG
ATCCCTGCTG TCATAGGCAC TAAGCTTGCT AACCCCGATA AGCAGGTGGT CGGCATCATA
GGTGATGGGG CATTTATGAT GACCCAGGCC GAGCTCTTTA CTGCATCCTC TCTCGGCATC
GGGGCTATCT TTACCATCTT TAACGACGGC GAGCTGGCTC AGATCTCCCA GGCGCAGAAA
GTCCCTTACA ATGCCGAGAC CTGTACTGTA CTCCCCGAGT TTAAGTTTAA GGCCTTAGTC
GAGGCTGCGG GATGCCGGTA CATTCGACTG CAGAGCAATG AGGAGATAAG TGAAAAGATA
GCTGAAGCAC TGGCCTTGTC TGAAGAGAAT ATTCCAGTGG TACTCGATGT GAATATTGAT
TACAGCAAGA AGACCCGCTT TACCAAAGGG ATCATCTCAA CCAATCTGAA CCGAATGAAT
CTGCCGACCA AAGTCAGGAT GATCAGCAGG GCGTTGTGGC GAAGGCTATA G
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| Protein sequence | MKKTAAWLVR YALEQLNIKY TFGIPGVHNT EIYDELAQSD SIEPVLVTHE GHGAFMADAV
SRSSDSTGTL LIVPAAGATH AASGIAEASL DGIPMLVISG GVRTDSKYSY QLHDMDQHKM
LEPITKKTFK VTRHQEVVAT LFEAFRLAND GEPGPVFVEI PVNLQLDKGE VSDLPVYRAP
VKSLSHSLDA QLTQAVTLLA NAKNPAIFVG WGGVETSGCT EQIAALLGTP VATTLQGLSA
FPAKHPLHTG MGFGPAAVPA ATNAFKACDC LLAIGTRFAE IGTGSFGVTV PENLIHIDIN
PDVFNANYPA KVAIEGDAGA VLAALLEKLQ KTHIRAKDAA VIEQAIKRDK KSYMDEWLAH
DSGDRVNPGA FFQQLRASLD DDAYVVADDG NHTFLTAELM PCYLPKHFFS PTDFNCMGYA
IPAVIGTKLA NPDKQVVGII GDGAFMMTQA ELFTASSLGI GAIFTIFNDG ELAQISQAQK
VPYNAETCTV LPEFKFKALV EAAGCRYIRL QSNEEISEKI AEALALSEEN IPVVLDVNID
YSKKTRFTKG IISTNLNRMN LPTKVRMISR ALWRRL
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