| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0866 |
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| Symbol | |
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| ID | 5613631 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1030174 |
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| End bp | 1031184 |
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| Gene Length | 1011 bp |
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| Protein Length | 336 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640931714 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_001472605 |
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| Protein GI | 157374005 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTCCTG AAAATGTCGA TACAAGTATC AGTTTACTTG AGAGTGACAA TACCCAACTC
AATTTAGTTC GCTGGATGCA CCAATGTGAA TTGATGAAAC GCTATTATCA AGCCGATGTC
GTATTTGTTA TTCAAGAAAC CAGCAGTGGT TTCGAGGTTA TCGTCAGCTC CATCAGTCAG
AACCGCTTAT TAACCACCGG CACTCTCTTC GAACCCGATG ATAAAATATT CCAGCGCCTG
GTTCACTCAC AGCCAGAAGG GTTGAATATC GACCTGACCA ATCAAAAGAA ATTAATTTTG
CCGGATGTGT TTGCCAATGC GGACAATATG CTGACCCGCC CAATCTTATG GCCCGACGGG
ACTCACTTCG GTTGTATTTG CGTGCTCAAC ACCAGAATAT CCTCAAATGA AACAAACTCC
TTTATGCTTG AGCCTTTTCA AATATTATTG CAGCAAGAGC TCACCCTCTA TTGCCAAACT
CAGCGTATCG AGTCGCTATC GATGAGAGAC AGAGAGACAG GCATGCTGAA TAGGTATGGC
TTTATCATGA TGGCCCCGCG GCAACTCAGC CTCGGTCGGC GTTTTGGCGC ATCCGCTGGC
ATAATATTTT TCGAGCTGTA CCCAACGCCC CCTTTAGAAC ATATCGAGGA TAAACATAAC
CGCTTATTAG GTTCCATTAT CCAGGATACG ATACGAACCG CAGACATAGC GGCGCACTAT
AGTGAGACAC AATTTGTTGT TCTGGTATTT GTGGATTCGG AGCGCGACCT TATTCACATA
GGTAAACGCG TAGAAAAACT GCTTTTTCAA CAAAATGATA AGCTCAATGT AGACTCAAGC
TGTAATTATT TCACCCCTGA TTCGTCAGTA AAACTAGCTC CTATGCTGGA AGAGTCGAAA
AAAGGACTCA AATCTGAGCT CCACAAACTT GAGGCGGCCC AAGTTAAAGC CAAGGCTTCA
CAAGAGACCC AAGCCGAACA CAGAGAGGAG AATGATCGGA TTAGCCACTA A
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| Protein sequence | MLPENVDTSI SLLESDNTQL NLVRWMHQCE LMKRYYQADV VFVIQETSSG FEVIVSSISQ
NRLLTTGTLF EPDDKIFQRL VHSQPEGLNI DLTNQKKLIL PDVFANADNM LTRPILWPDG
THFGCICVLN TRISSNETNS FMLEPFQILL QQELTLYCQT QRIESLSMRD RETGMLNRYG
FIMMAPRQLS LGRRFGASAG IIFFELYPTP PLEHIEDKHN RLLGSIIQDT IRTADIAAHY
SETQFVVLVF VDSERDLIHI GKRVEKLLFQ QNDKLNVDSS CNYFTPDSSV KLAPMLEESK
KGLKSELHKL EAAQVKAKAS QETQAEHREE NDRISH
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