| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0865 |
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| Symbol | |
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| ID | 5613630 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1028998 |
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| End bp | 1029942 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931713 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001472604 |
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| Protein GI | 157374004 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAGCCC AAAGCACACA TCACCTACTT TGGCTAAGGG AGCAAGATCA TCCGGCTATT
AGCCTGCCAA GGTGGCAACA ACAAGTAGAG TTATTAAGTA ATTTTTACCA ATCCCAGGCT
TGCCTGATCC TTCAAGTGGT CAACGATAGC GTTCAAATTG TCTGCGCCCG TCAGAGTCAA
AACTTCCACT TAAACGGAGG CACAGGCTTT GAAGATGCCG GCTTGTTAGC CGTGATCCAT
AACTACGATG GCTACAACCT AACTAAGTCC TCAGGGGCTG ACTTTACTTC TGAGCTTTCT
CAATTTAATC AGGTGTTATC CCGCCCCATA TTTTGGCCAG ATGGCGAGCT ATTCGGTTGT
ATCTTGGTCT GTGACCCGCT GCAGGCTAAA TACCGTGAGC GATTAACCCC TCTCGTCGAA
ACTGCAACCT CATTGATCCA GGGTGAATTG AAGCATGTCT TTCTCATGCA GCAGGTAAAA
ATGCTCTCGG TACAGGACGA GCAAACCTGT ATGCTCAACC CTTACGGTTT CAGCTTAATG
GCTCCAAGGC AACTCAGTCT AAGCCGACGT TTTGGCTCCC ACGCCGGGAT CATTTTAATC
GAAGAGATGA TGAACGAGTC ACCCGAGTCT TCCAAGGACG ATGAGGGACA GAGAATACGC
ATGCTGGCCA GGATCATTCA CGACAACCTC AGAGATGCCG ATGTGTCAGC CAGAGTAGGT
CACCGGCAAT TTATCATCCT CTGCTTCATC GATAATGAAT CTAATCTCGA TGCCCTTGTT
TCCAGATTGA AAAAGCAGAT AGCTAAAGAG GATCCAAACT TAAAACTTGT TACAGGACAG
AGTTACTTTA CGCCAGATAT TCAAATCAGT CTGGATCCTA TGCAGGCAAA GGCTAAAGAG
AACTTAAACA TGAACAAACT TGAGCATCAG AAAACGACCC GCTAG
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| Protein sequence | MLAQSTHHLL WLREQDHPAI SLPRWQQQVE LLSNFYQSQA CLILQVVNDS VQIVCARQSQ
NFHLNGGTGF EDAGLLAVIH NYDGYNLTKS SGADFTSELS QFNQVLSRPI FWPDGELFGC
ILVCDPLQAK YRERLTPLVE TATSLIQGEL KHVFLMQQVK MLSVQDEQTC MLNPYGFSLM
APRQLSLSRR FGSHAGIILI EEMMNESPES SKDDEGQRIR MLARIIHDNL RDADVSARVG
HRQFIILCFI DNESNLDALV SRLKKQIAKE DPNLKLVTGQ SYFTPDIQIS LDPMQAKAKE
NLNMNKLEHQ KTTR
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