| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0845 |
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| Symbol | |
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| ID | 5613108 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1007379 |
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| End bp | 1009115 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640931693 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001472584 |
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| Protein GI | 157373984 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 56 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGCGTG TTACTCTCAC ACTCATATCC ACATTACTAG CAATATTATC AAGCCTATTG
CCAGTACTCG CTGCACCTTT AGATACGTCA AACGTGTCTA AACAACCGAT AGGTAGAGAG
CTCCTCTTCT TTCAAGAGCA GCAGCCGCTC TGTGTTAACT CAGCCTTATC AAACTATCTG
CAAGGGGGTT TTACAGCCTC TCATTCAAGG GTTCTCAGCT TCGGTATTGG ATCTAAACCC
GTCTGGTTGG CCTTTGATGT TGAAAATCCA CTAACCTTCC CGGTTAATAG GCGGATCCAG
ATAGCGACAT CCTGGCTGGA CAGTGTCGAC ATTCACTATA TTCCGACACA AACTACCGCA
TACAGTCAGA TTTTGACTCA ATATTCTGGT GATAGAAGTT CTTTCACCGA CCGCAATTTA
AACGATAGGT ATTTCAGCTT CGACCATGAC TTCACACCGG GAAAAACGAC GGTATTAATT
CGTATAGAAT CTCCTGATCC TATGGTGTTG CCGATATACT TTTCAAGTCT GGATACAGCA
CTGGATAGAT CCCAATTCCA AAGTTATAGC TATGGCTTCC TCTATGGTGC AGTACTCTGC
CTGCTTATCT ACAACCTGAT GTTATTTATC GGGATGAGAA GCATCAGCTA CCTCTTATAC
TCGATGTTTT TATTTGGATT TCTATTGATG AACTTGTCCT ATACAGGCCA TGGTTATCAG
TGGCTATGGC CTGAGTTCCC ACGATGGCAG CAGTGGGCAA ACCCGGTATT GATGATGCTG
TTCAATGTGA CTGGCCTGCT GTTTGCATTA CGTTTTCTGC GGGTAAAATC CTTCCTGCCG
GGCACCTATA AACTCACCAA GCTTATCTGC ATCCTGTTCC CTCTACTCCT GCTTATGGCC
TTCATCGCCG ACGATCAGGT TCTTGGGCTC ATTTTTGCCT TCGACTTTAT GCTTCTATTC
TCATTTATGA TGATACTGCT TGGTATCATG GCATTTAATG TCGGCAACCC AAGCGCTAAG
GTATTTTTAC TGGCATCGAC ATCTTCGATG ACAGGTGCCG CCGTCACAGG TATGGCGGTT
TGGGGCTTTA TTCCATTTAC TGACTTAACC TATCGCGCCG CGGAAATCGG CATTATTATC
GACATAGTGT TATTGGCATT GGCGCTGGCT GTCAAATTTC GCGCCACAGA AAGAGAGAAG
CTCATTGCCG AACATCAGGC CAAGATCGAC CCTCTGACAG GACTCAAAAA TCGCCGGGCC
TTCTATGAGA TAACTCCATC TTTCTGGAAG CAAAAGAGGA CAAGAGTTGG AGTATCGATG
ATCATTATCG ACATTGATTA TTTCAAGGCC ATCAACGACA CATATGGTCA TACTGTCGGT
GATGAGGTTC TTGTTCAATT TGCAACACTA TTGAACAAGA ATCTCAGGCA GCAAGATATC
GTAGCTCGCT GGGGAGGTGA GGAGTTTATT CTATTGCTTC CCAAGACTCG GCTCAAAGAG
GCTTCGACTA TCTCTAAACA CCTGTGTGAG AGCATTTCAA AGCATGCATT TATTGCTGAC
CGTAATGAAC TTCAGGTAAC CGCAAGTATA GGGCTGGCAC ACGGGAGTCC GGCTCAGTTC
ACCTTAGAGC AACTGATTTC ACTTGCCGAT CAGCAACTCT ATCGGGCCAA ACAACGCGGA
AAGAATCAAA TAAGTTATGA AAATAGCCCA GATGTCCCAG GCGGAACTTG TAATTGA
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| Protein sequence | MRRVTLTLIS TLLAILSSLL PVLAAPLDTS NVSKQPIGRE LLFFQEQQPL CVNSALSNYL
QGGFTASHSR VLSFGIGSKP VWLAFDVENP LTFPVNRRIQ IATSWLDSVD IHYIPTQTTA
YSQILTQYSG DRSSFTDRNL NDRYFSFDHD FTPGKTTVLI RIESPDPMVL PIYFSSLDTA
LDRSQFQSYS YGFLYGAVLC LLIYNLMLFI GMRSISYLLY SMFLFGFLLM NLSYTGHGYQ
WLWPEFPRWQ QWANPVLMML FNVTGLLFAL RFLRVKSFLP GTYKLTKLIC ILFPLLLLMA
FIADDQVLGL IFAFDFMLLF SFMMILLGIM AFNVGNPSAK VFLLASTSSM TGAAVTGMAV
WGFIPFTDLT YRAAEIGIII DIVLLALALA VKFRATEREK LIAEHQAKID PLTGLKNRRA
FYEITPSFWK QKRTRVGVSM IIIDIDYFKA INDTYGHTVG DEVLVQFATL LNKNLRQQDI
VARWGGEEFI LLLPKTRLKE ASTISKHLCE SISKHAFIAD RNELQVTASI GLAHGSPAQF
TLEQLISLAD QQLYRAKQRG KNQISYENSP DVPGGTCN
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