| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0838 |
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| Symbol | |
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| ID | 5613059 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 994387 |
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| End bp | 998709 |
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| Gene Length | 4323 bp |
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| Protein Length | 1440 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931686 |
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| Product | formate dehydrogenase, alpha subunit |
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| Protein accession | YP_001472577 |
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| Protein GI | 157373977 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases
[COG3383] Uncharacterized anaerobic dehydrogenase |
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| TIGRFAM ID | [TIGR01591] formate dehydrogenase, alpha subunit, archaeal-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAGC TGAAAATCGA TGGTACCTTG CTATCGGCTC ATCCCGAAGA ACTCCTGATT
GACATAGCAA GAGATGCGGG GATAGCGATC CCCAGTCTTT GCGAGCGGCC AGGCACGGGT
AAACACAAGA GTGGCAGTGA AGAGAAAAGC CACTGCAACC TCTGTGTAGT TGAGATCCAT
TCTCAAGAGA CGACTACAGA GGAGGAGGCC AATCCCTCAA CCGTAAGGTC CTGTGAAACG
ACATTGGGTG AGCTTTGTGC CAGTGCCGCA ACCGACATGA GCGCAGGCAG CGAAACTCAG
ATTGAAGTTG TCACTCAATC GGCCTACCTT AGCCAGCAGC GACAAGCCTC GTTGACAGAA
ATATTAAGTG ACCACTTTGC AGACTGTGAG GCCCCCTGCC AACAAGCCTG CCCGGCAGGC
GTCGATGTAC AGTCATACCT GTTTCATATC GCACAAGGCA ACCATAAAGA AGCCGTAAAG
GTGATTAAGC AGACCCTGCC ACTCCCTCTG TCTATCGGCA GAGTATGCCC CGCATTTTGT
GAAACCGAGT GCAGACGAGG CCTGGTTGAT GAGCCTGTAG CAATAAGACA GCTCAAGCGA
CATGCTGCAG ACCTGGATAT CGAAGACAGC GAGAGCTATG TGCCACCTAA GTCTCCGGCA
ACAGGGAAAA AAGTCGCCAT TATAGGCAGT GGACCCGCAG GTATAACGGC CGGATATTAT
CTGTCCAATT CGGGACACGA TGTCACCATC TATGAGTCAA TGCCAAAAGC CGGCGGCTGG
TTACGCTACG GAATTCCTGA ATACCGTCTC CCTAAGGCGA TACTCGATAA AGAGATCGAC
CTGCTGTGTA AAAACGGTTT AAACATCCAG ACTAACATCA GGCTGGGTGA GCAGATCCAC
CTTAAGCAGC TTGTCGATGA TTTCGATGCA GTATGCTTAG CCATAGGCGC ACAAAAAGCA
GTACCGATGA ACTATCCGGG TATCGATCTT GAAGGTTGTT ACTTAGGTGT CGACTATCTA
AAAGATCACT GCACAGAAAA GCGCTACAGG ACAGGAGATA AGGTGGCCGT GATCGGAGGG
GGAAACACCG CCATAGATTG CGCGCGAACC GCAAAGCGTG ACGGAGCCGA TGTGACCCTC
ATCTATCGTC GCACCCGTGA CGAGATGCCT GCCGAGCCTT TTGAGATCGA GGAAGCCGAA
CACGAAGGGA TTAATTTCCA TTTCCTGACA AACCCCATAG AGAATCACAG TGATCTCCAT
GGAAGAGTAG AGAGTGTCAC CCTGGAAAAA ATGGCATTAG GGGAACCCGA TGCGACAGGA
AGAAGGGCTC CCATCGCTAC CGGAGAGCAT TTTACCCAAG CCTTCGATAC CGTTATTCCA
GCCGTTTCAC AGATGCCGGA TATGGAGTTT CTTAAACACC CGGAAAGTCA GCTCACCACA
GGGAAGCTGG CTCTTACCCG CTGGAATACA TTCGAAGGTT GCGATCATAC TATGTCGGCG
GGCCTGTCAT CAGGCATCGA TAAACTCTTT GTATTAGGTG ATTCCAGAAC GGGACCGGCT
ACGGCCGTCG CAGCGGTGGC CGACGGCAGA AAAGCCGCTC AGGCTATCGA AAAGTTGCTG
ACACAAGGTC TGGCCTGTGA GCTTAGCCCG AAGCAGTTCA ATGCCACTAA ATCCGGTGAC
AACACTGAGT TGTCGTCGGC ACTTTATCCT GATATAAAGC AACGACCTAA GGCCAAGATG
TTAGAGCTCG GCCTGCAAGA GAGAAGCTTT AATTTCAATG AAATTGAACT CGGCTTCGAG
CCCGATCAGG CGATGCAAGA GGCAGCCCGA TGTCTTGAGT GTGCATGCCA GGCCAATACC
GACTGTAAGC TGCGCGACTA TGCGACCGAA TACAAGGTTG ATTCCACCTC CCTCACCAAT
AGTGAACCGG CGGACGCACC GAGACAATTC AGTATCGATA CCAGCAGCCC TTTCATTACC
TTCGATGCTA ACCGCTGCAT CAGCTGTGGT GCCTGTGTGG AAGTTTGTCA GGGTCAGGAT
GGCCATAATG CCATCAGCTT TGCGCCCGAT AACTATCAGG CTCTGCCAAC CGAAATTGCA
GTCCAACAGT GTAAACGCGC CCCTCGTGCA GGCTTTAGCG CTTCGATGAA TGACAGTGAT
TGTGTGCAGT GTGGTAGCTG CGTTCAAGTC TGCCCAACTG GAGCCCTGGT CGATGCGCGG
GATAAAACTC AGGGAGTAAG GATTGAGCTG AAGCAGGTAT CGACCATCTG TACCTACTGC
GGTATAGGTT GCAGGCTTAA TATGCATGTC GATGAAACCG AAAATAAAAT TAAGCGGATC
ACCGGCGATA CCCGCTCAGT CGTCAATGAG GGGATGTTAT GTGTCAAGGG CCGCTTCGGT
TTTGACTTTA TCTCCAGTGA ACAGAGGCTG ACTCATCCGC TCATTCGAAA AGAGGGAAAG
CTGGTTCGAG CTTCCTGGAG TGAAGCTTTC GATTATATCG GCAGTAAACT CAGTCCCATT
ATCGAAAAAC ATGGCGGTAA TGCGCTGGCC GGACTCGCCT CGGCCAAAGC GACAAATGAA
GATAACTATC TATTTCAAAA GCTATTCAGA AGCGTTATCG GCACGAATAA TATCGACCAC
TGTGCCAGAT TGTGTCATGC ATCGACCGTT ACCGCCCTCT ATGACAGCTT AGGCAGCGGA
GCCATGAGCA ATGATATTCC GGGCATTAAA GAGTCCGATC TGATCTTCAT ATTAGGCTCC
GATACCAGCA ACGCCCATCC AATCATCGCC TCACGGATTA AGACGGCTAT TCGTGACCAT
GGTGCCAGAC TAATCGTTGC CGATCCCAAG CGAGTAGATA TTGCCGATCA CGCTCGCCTC
TACGTCAAAC AGAGACCCGG CACTGACATC ATGCTGCTCA ATGCTATCAT GCAGCAGATC
ATTACCAATA ACTGGCACGA TCAGGCCTAT ATTCAGGACA GAGTCGATGG ATTTAGCGCC
CTTTACGACG AGGTGATGAA GCCAGACTAT AACCTAGGCA ATGCAGAACT TATTACCGGC
GTTGATGCAG CAGATATTGT CGCTATCGCA CAGATGATAG GAACTGCAGA GAAGACGGCG
GTCTATTACG CCATGGGGAT CACCCAGCAT ACTTCAGGCC ATGACAATGT CACCGCAATT
TCCAATCTGC AGTTGCTCTG CGGGAACATA GGTGTTCGTG GCGCAGGCAT TAACCCACTG
CGAGGTCAGA GTAATGTTCA GGGAGCATGT GACATGGGCG CGCTACCGAA TTATTTCAGC
GGTTATCAAA GAGTCGATGA TCCTCTGGTG CAGCGTCAAT TCAGACAAGC CTGGAACAAT
CAGGAACTCC CCAACCGGGA GGGCATAGCA GCAACTGAGA TGATGCTTTC AATTCTCAAG
GGAGATCTGA GAGCACTCTA CATTATGGGT GAGAACCCGG TACTGAGCGA TCCCGATCAG
ACTCATGTAC TCGAAGCTTT GCAGGCTGTA GAGTTTATGA TTGTGCAAGA TATCTTTCTG
ACTGAGACCG CCGAGCTTGC CGATGTGGTA CTCCCGGCCC TGACGTTCGC AGAAAAAACA
GGACACTTCA CCAATACCGA GCGCCGGGTA CAGCAACTGC AAGTAGCAGT AAAAGCTCCG
GGAATTGCTA TGGACGACTG GCAGATAGTA CAACAAGTTG CCAACCGTTT AGGCGCCGAC
TGGCACTATG AAGATGAGAA AGCGATATGG CATGAGATAA CTCAGGTTAC CCCTCAATAC
CGGGGGATTA GTTGGGACTC AGTCGACATT AACACTGAAC ATGGCATCAA GGGAGTTCAA
TGGCCCTGCC CGACGCAGAA CCATCCAGGC ACTCCTGTAC TGCATACCAG CCAATTCACC
CGTGGCCGGG CACAAATGAG GCCTGTAAGC CATACGCTTC CCCCGGAGAT GCCGTGTAGC
GAATATCCGC TTATCCTTTC AACCGGCCGC TTACTCGAGC AATTTCACAC CGGAACCCTC
ACTCGAAAGA CGGCGGGACT GGATGAGCTT GGTGCACCAA AGGTGATGAT ATCTGTCTAT
GACGCTGAGA TATTAGGGAT TAATAATGGC GATATGCTAA CGATCTCATC TCGCCGTGGG
GAGATTGAAA TCGCGGCCTT TGTGACTAAA CGAGCCCAAG CGGGAGTGTT GTTTTTACCC
TTCCACTTTG CAGAAGCGGC AGCCAATAAA CTGACCATCA ATGCACTCGA TCCTATCGCA
AAGATCCCCT CGTTTAAGAT CTGTGCCATC AAAGCGGAAA AGCTTGAACC GGCAATGGGG
TAA
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| Protein sequence | MKKLKIDGTL LSAHPEELLI DIARDAGIAI PSLCERPGTG KHKSGSEEKS HCNLCVVEIH
SQETTTEEEA NPSTVRSCET TLGELCASAA TDMSAGSETQ IEVVTQSAYL SQQRQASLTE
ILSDHFADCE APCQQACPAG VDVQSYLFHI AQGNHKEAVK VIKQTLPLPL SIGRVCPAFC
ETECRRGLVD EPVAIRQLKR HAADLDIEDS ESYVPPKSPA TGKKVAIIGS GPAGITAGYY
LSNSGHDVTI YESMPKAGGW LRYGIPEYRL PKAILDKEID LLCKNGLNIQ TNIRLGEQIH
LKQLVDDFDA VCLAIGAQKA VPMNYPGIDL EGCYLGVDYL KDHCTEKRYR TGDKVAVIGG
GNTAIDCART AKRDGADVTL IYRRTRDEMP AEPFEIEEAE HEGINFHFLT NPIENHSDLH
GRVESVTLEK MALGEPDATG RRAPIATGEH FTQAFDTVIP AVSQMPDMEF LKHPESQLTT
GKLALTRWNT FEGCDHTMSA GLSSGIDKLF VLGDSRTGPA TAVAAVADGR KAAQAIEKLL
TQGLACELSP KQFNATKSGD NTELSSALYP DIKQRPKAKM LELGLQERSF NFNEIELGFE
PDQAMQEAAR CLECACQANT DCKLRDYATE YKVDSTSLTN SEPADAPRQF SIDTSSPFIT
FDANRCISCG ACVEVCQGQD GHNAISFAPD NYQALPTEIA VQQCKRAPRA GFSASMNDSD
CVQCGSCVQV CPTGALVDAR DKTQGVRIEL KQVSTICTYC GIGCRLNMHV DETENKIKRI
TGDTRSVVNE GMLCVKGRFG FDFISSEQRL THPLIRKEGK LVRASWSEAF DYIGSKLSPI
IEKHGGNALA GLASAKATNE DNYLFQKLFR SVIGTNNIDH CARLCHASTV TALYDSLGSG
AMSNDIPGIK ESDLIFILGS DTSNAHPIIA SRIKTAIRDH GARLIVADPK RVDIADHARL
YVKQRPGTDI MLLNAIMQQI ITNNWHDQAY IQDRVDGFSA LYDEVMKPDY NLGNAELITG
VDAADIVAIA QMIGTAEKTA VYYAMGITQH TSGHDNVTAI SNLQLLCGNI GVRGAGINPL
RGQSNVQGAC DMGALPNYFS GYQRVDDPLV QRQFRQAWNN QELPNREGIA ATEMMLSILK
GDLRALYIMG ENPVLSDPDQ THVLEALQAV EFMIVQDIFL TETAELADVV LPALTFAEKT
GHFTNTERRV QQLQVAVKAP GIAMDDWQIV QQVANRLGAD WHYEDEKAIW HEITQVTPQY
RGISWDSVDI NTEHGIKGVQ WPCPTQNHPG TPVLHTSQFT RGRAQMRPVS HTLPPEMPCS
EYPLILSTGR LLEQFHTGTL TRKTAGLDEL GAPKVMISVY DAEILGINNG DMLTISSRRG
EIEIAAFVTK RAQAGVLFLP FHFAEAAANK LTINALDPIA KIPSFKICAI KAEKLEPAMG
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