Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0838 |
Symbol | |
ID | 5613059 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 994387 |
End bp | 998709 |
Gene Length | 4323 bp |
Protein Length | 1440 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640931686 |
Product | formate dehydrogenase, alpha subunit |
Protein accession | YP_001472577 |
Protein GI | 157373977 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only |
COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases [COG3383] Uncharacterized anaerobic dehydrogenase |
TIGRFAM ID | [TIGR01591] formate dehydrogenase, alpha subunit, archaeal-type |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAGC TGAAAATCGA TGGTACCTTG CTATCGGCTC ATCCCGAAGA ACTCCTGATT GACATAGCAA GAGATGCGGG GATAGCGATC CCCAGTCTTT GCGAGCGGCC AGGCACGGGT AAACACAAGA GTGGCAGTGA AGAGAAAAGC CACTGCAACC TCTGTGTAGT TGAGATCCAT TCTCAAGAGA CGACTACAGA GGAGGAGGCC AATCCCTCAA CCGTAAGGTC CTGTGAAACG ACATTGGGTG AGCTTTGTGC CAGTGCCGCA ACCGACATGA GCGCAGGCAG CGAAACTCAG ATTGAAGTTG TCACTCAATC GGCCTACCTT AGCCAGCAGC GACAAGCCTC GTTGACAGAA ATATTAAGTG ACCACTTTGC AGACTGTGAG GCCCCCTGCC AACAAGCCTG CCCGGCAGGC GTCGATGTAC AGTCATACCT GTTTCATATC GCACAAGGCA ACCATAAAGA AGCCGTAAAG GTGATTAAGC AGACCCTGCC ACTCCCTCTG TCTATCGGCA GAGTATGCCC CGCATTTTGT GAAACCGAGT GCAGACGAGG CCTGGTTGAT GAGCCTGTAG CAATAAGACA GCTCAAGCGA CATGCTGCAG ACCTGGATAT CGAAGACAGC GAGAGCTATG TGCCACCTAA GTCTCCGGCA ACAGGGAAAA AAGTCGCCAT TATAGGCAGT GGACCCGCAG GTATAACGGC CGGATATTAT CTGTCCAATT CGGGACACGA TGTCACCATC TATGAGTCAA TGCCAAAAGC CGGCGGCTGG TTACGCTACG GAATTCCTGA ATACCGTCTC CCTAAGGCGA TACTCGATAA AGAGATCGAC CTGCTGTGTA AAAACGGTTT AAACATCCAG ACTAACATCA GGCTGGGTGA GCAGATCCAC CTTAAGCAGC TTGTCGATGA TTTCGATGCA GTATGCTTAG CCATAGGCGC ACAAAAAGCA GTACCGATGA ACTATCCGGG TATCGATCTT GAAGGTTGTT ACTTAGGTGT CGACTATCTA AAAGATCACT GCACAGAAAA GCGCTACAGG ACAGGAGATA AGGTGGCCGT GATCGGAGGG GGAAACACCG CCATAGATTG CGCGCGAACC GCAAAGCGTG ACGGAGCCGA TGTGACCCTC ATCTATCGTC GCACCCGTGA CGAGATGCCT GCCGAGCCTT TTGAGATCGA GGAAGCCGAA CACGAAGGGA TTAATTTCCA TTTCCTGACA AACCCCATAG AGAATCACAG TGATCTCCAT GGAAGAGTAG AGAGTGTCAC CCTGGAAAAA ATGGCATTAG GGGAACCCGA TGCGACAGGA AGAAGGGCTC CCATCGCTAC CGGAGAGCAT TTTACCCAAG CCTTCGATAC CGTTATTCCA GCCGTTTCAC AGATGCCGGA TATGGAGTTT CTTAAACACC CGGAAAGTCA GCTCACCACA GGGAAGCTGG CTCTTACCCG CTGGAATACA TTCGAAGGTT GCGATCATAC TATGTCGGCG GGCCTGTCAT CAGGCATCGA TAAACTCTTT GTATTAGGTG ATTCCAGAAC GGGACCGGCT ACGGCCGTCG CAGCGGTGGC CGACGGCAGA AAAGCCGCTC AGGCTATCGA AAAGTTGCTG ACACAAGGTC TGGCCTGTGA GCTTAGCCCG AAGCAGTTCA ATGCCACTAA ATCCGGTGAC AACACTGAGT TGTCGTCGGC ACTTTATCCT GATATAAAGC AACGACCTAA GGCCAAGATG TTAGAGCTCG GCCTGCAAGA GAGAAGCTTT AATTTCAATG AAATTGAACT CGGCTTCGAG CCCGATCAGG CGATGCAAGA GGCAGCCCGA TGTCTTGAGT GTGCATGCCA GGCCAATACC GACTGTAAGC TGCGCGACTA TGCGACCGAA TACAAGGTTG ATTCCACCTC CCTCACCAAT AGTGAACCGG CGGACGCACC GAGACAATTC AGTATCGATA CCAGCAGCCC TTTCATTACC TTCGATGCTA ACCGCTGCAT CAGCTGTGGT GCCTGTGTGG AAGTTTGTCA GGGTCAGGAT GGCCATAATG CCATCAGCTT TGCGCCCGAT AACTATCAGG CTCTGCCAAC CGAAATTGCA GTCCAACAGT GTAAACGCGC CCCTCGTGCA GGCTTTAGCG CTTCGATGAA TGACAGTGAT TGTGTGCAGT GTGGTAGCTG CGTTCAAGTC TGCCCAACTG GAGCCCTGGT CGATGCGCGG GATAAAACTC AGGGAGTAAG GATTGAGCTG AAGCAGGTAT CGACCATCTG TACCTACTGC GGTATAGGTT GCAGGCTTAA TATGCATGTC GATGAAACCG AAAATAAAAT TAAGCGGATC ACCGGCGATA CCCGCTCAGT CGTCAATGAG GGGATGTTAT GTGTCAAGGG CCGCTTCGGT TTTGACTTTA TCTCCAGTGA ACAGAGGCTG ACTCATCCGC TCATTCGAAA AGAGGGAAAG CTGGTTCGAG CTTCCTGGAG TGAAGCTTTC GATTATATCG GCAGTAAACT CAGTCCCATT ATCGAAAAAC ATGGCGGTAA TGCGCTGGCC GGACTCGCCT CGGCCAAAGC GACAAATGAA GATAACTATC TATTTCAAAA GCTATTCAGA AGCGTTATCG GCACGAATAA TATCGACCAC TGTGCCAGAT TGTGTCATGC ATCGACCGTT ACCGCCCTCT ATGACAGCTT AGGCAGCGGA GCCATGAGCA ATGATATTCC GGGCATTAAA GAGTCCGATC TGATCTTCAT ATTAGGCTCC GATACCAGCA ACGCCCATCC AATCATCGCC TCACGGATTA AGACGGCTAT TCGTGACCAT GGTGCCAGAC TAATCGTTGC CGATCCCAAG CGAGTAGATA TTGCCGATCA CGCTCGCCTC TACGTCAAAC AGAGACCCGG CACTGACATC ATGCTGCTCA ATGCTATCAT GCAGCAGATC ATTACCAATA ACTGGCACGA TCAGGCCTAT ATTCAGGACA GAGTCGATGG ATTTAGCGCC CTTTACGACG AGGTGATGAA GCCAGACTAT AACCTAGGCA ATGCAGAACT TATTACCGGC GTTGATGCAG CAGATATTGT CGCTATCGCA CAGATGATAG GAACTGCAGA GAAGACGGCG GTCTATTACG CCATGGGGAT CACCCAGCAT ACTTCAGGCC ATGACAATGT CACCGCAATT TCCAATCTGC AGTTGCTCTG CGGGAACATA GGTGTTCGTG GCGCAGGCAT TAACCCACTG CGAGGTCAGA GTAATGTTCA GGGAGCATGT GACATGGGCG CGCTACCGAA TTATTTCAGC GGTTATCAAA GAGTCGATGA TCCTCTGGTG CAGCGTCAAT TCAGACAAGC CTGGAACAAT CAGGAACTCC CCAACCGGGA GGGCATAGCA GCAACTGAGA TGATGCTTTC AATTCTCAAG GGAGATCTGA GAGCACTCTA CATTATGGGT GAGAACCCGG TACTGAGCGA TCCCGATCAG ACTCATGTAC TCGAAGCTTT GCAGGCTGTA GAGTTTATGA TTGTGCAAGA TATCTTTCTG ACTGAGACCG CCGAGCTTGC CGATGTGGTA CTCCCGGCCC TGACGTTCGC AGAAAAAACA GGACACTTCA CCAATACCGA GCGCCGGGTA CAGCAACTGC AAGTAGCAGT AAAAGCTCCG GGAATTGCTA TGGACGACTG GCAGATAGTA CAACAAGTTG CCAACCGTTT AGGCGCCGAC TGGCACTATG AAGATGAGAA AGCGATATGG CATGAGATAA CTCAGGTTAC CCCTCAATAC CGGGGGATTA GTTGGGACTC AGTCGACATT AACACTGAAC ATGGCATCAA GGGAGTTCAA TGGCCCTGCC CGACGCAGAA CCATCCAGGC ACTCCTGTAC TGCATACCAG CCAATTCACC CGTGGCCGGG CACAAATGAG GCCTGTAAGC CATACGCTTC CCCCGGAGAT GCCGTGTAGC GAATATCCGC TTATCCTTTC AACCGGCCGC TTACTCGAGC AATTTCACAC CGGAACCCTC ACTCGAAAGA CGGCGGGACT GGATGAGCTT GGTGCACCAA AGGTGATGAT ATCTGTCTAT GACGCTGAGA TATTAGGGAT TAATAATGGC GATATGCTAA CGATCTCATC TCGCCGTGGG GAGATTGAAA TCGCGGCCTT TGTGACTAAA CGAGCCCAAG CGGGAGTGTT GTTTTTACCC TTCCACTTTG CAGAAGCGGC AGCCAATAAA CTGACCATCA ATGCACTCGA TCCTATCGCA AAGATCCCCT CGTTTAAGAT CTGTGCCATC AAAGCGGAAA AGCTTGAACC GGCAATGGGG TAA
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Protein sequence | MKKLKIDGTL LSAHPEELLI DIARDAGIAI PSLCERPGTG KHKSGSEEKS HCNLCVVEIH SQETTTEEEA NPSTVRSCET TLGELCASAA TDMSAGSETQ IEVVTQSAYL SQQRQASLTE ILSDHFADCE APCQQACPAG VDVQSYLFHI AQGNHKEAVK VIKQTLPLPL SIGRVCPAFC ETECRRGLVD EPVAIRQLKR HAADLDIEDS ESYVPPKSPA TGKKVAIIGS GPAGITAGYY LSNSGHDVTI YESMPKAGGW LRYGIPEYRL PKAILDKEID LLCKNGLNIQ TNIRLGEQIH LKQLVDDFDA VCLAIGAQKA VPMNYPGIDL EGCYLGVDYL KDHCTEKRYR TGDKVAVIGG GNTAIDCART AKRDGADVTL IYRRTRDEMP AEPFEIEEAE HEGINFHFLT NPIENHSDLH GRVESVTLEK MALGEPDATG RRAPIATGEH FTQAFDTVIP AVSQMPDMEF LKHPESQLTT GKLALTRWNT FEGCDHTMSA GLSSGIDKLF VLGDSRTGPA TAVAAVADGR KAAQAIEKLL TQGLACELSP KQFNATKSGD NTELSSALYP DIKQRPKAKM LELGLQERSF NFNEIELGFE PDQAMQEAAR CLECACQANT DCKLRDYATE YKVDSTSLTN SEPADAPRQF SIDTSSPFIT FDANRCISCG ACVEVCQGQD GHNAISFAPD NYQALPTEIA VQQCKRAPRA GFSASMNDSD CVQCGSCVQV CPTGALVDAR DKTQGVRIEL KQVSTICTYC GIGCRLNMHV DETENKIKRI TGDTRSVVNE GMLCVKGRFG FDFISSEQRL THPLIRKEGK LVRASWSEAF DYIGSKLSPI IEKHGGNALA GLASAKATNE DNYLFQKLFR SVIGTNNIDH CARLCHASTV TALYDSLGSG AMSNDIPGIK ESDLIFILGS DTSNAHPIIA SRIKTAIRDH GARLIVADPK RVDIADHARL YVKQRPGTDI MLLNAIMQQI ITNNWHDQAY IQDRVDGFSA LYDEVMKPDY NLGNAELITG VDAADIVAIA QMIGTAEKTA VYYAMGITQH TSGHDNVTAI SNLQLLCGNI GVRGAGINPL RGQSNVQGAC DMGALPNYFS GYQRVDDPLV QRQFRQAWNN QELPNREGIA ATEMMLSILK GDLRALYIMG ENPVLSDPDQ THVLEALQAV EFMIVQDIFL TETAELADVV LPALTFAEKT GHFTNTERRV QQLQVAVKAP GIAMDDWQIV QQVANRLGAD WHYEDEKAIW HEITQVTPQY RGISWDSVDI NTEHGIKGVQ WPCPTQNHPG TPVLHTSQFT RGRAQMRPVS HTLPPEMPCS EYPLILSTGR LLEQFHTGTL TRKTAGLDEL GAPKVMISVY DAEILGINNG DMLTISSRRG EIEIAAFVTK RAQAGVLFLP FHFAEAAANK LTINALDPIA KIPSFKICAI KAEKLEPAMG
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