| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0828 |
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| Symbol | |
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| ID | 5612454 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 983074 |
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| End bp | 983817 |
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| Gene Length | 744 bp |
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| Protein Length | 247 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931676 |
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| Product | spermine synthase |
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| Protein accession | YP_001472567 |
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| Protein GI | 157373967 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0421] Spermidine synthase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.547147 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGATT TAGAAGTACT TCACCGATGT GAAGATGAAC ATGGGCCATT GCTGGTCTTA
GATGATAAAC ATATGCGTGT TCTCTCCTTT GGTGACAACG ATGAGCAGAG TAAGCTACTT
AAGCTTGAGC CTCATATTCC TCAGCATACT TATCTGCAAG CCATGCTTTT AGTCCTGTTA
TTTATAAAGC CTAAGCGCGT GATTATTTTG GGTCTTGGTG GTGGTGGTTT GATCCATGCG
CTTCGTCATT TCGATACCGG TATTAAAGTC ACCGCGGTTG AGCTGAGATC AAAAGTGATT
GAGCTGGCTA AACGCTTTTT TCAATTACCG ATTGGCAAGA AGTTCACCGT CATCCATCAA
GATGCTGCAC AGTTTCTTCA GGAAGGTGAT CATAAAAAGG CCGATGTTAT CTTTGCCGAC
ATTTATGGTG CCGACGGTGT GGATGAGAGC CAGTTGTCGG AAGCGTTTAT CGAAAACTCG
GCATCATTGA TCAAGTCCGA CGGGTTTCTG GTGCTCAATT GTTGGAAGGA ACATAGCCAA
AACCGCGTTT TGCTGAGCCT GCTACAGAAA CATTTCTGCG AGGTTAGGGC CTGCTTGACT
GGCGGCGGAA ACTGGGTGGT GCTTGCGGGT AAGAATCGAA GAGAGATCAG CAGCAGTGGG
TTAAAAACCA AGGCGCACAG TTTGTCACAG CAATTGGATT TTACCCTGGG ACGTTCTTTG
ACACGCTTCG ATATTTGGGA ATAA
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| Protein sequence | MTDLEVLHRC EDEHGPLLVL DDKHMRVLSF GDNDEQSKLL KLEPHIPQHT YLQAMLLVLL
FIKPKRVIIL GLGGGGLIHA LRHFDTGIKV TAVELRSKVI ELAKRFFQLP IGKKFTVIHQ
DAAQFLQEGD HKKADVIFAD IYGADGVDES QLSEAFIENS ASLIKSDGFL VLNCWKEHSQ
NRVLLSLLQK HFCEVRACLT GGGNWVVLAG KNRREISSSG LKTKAHSLSQ QLDFTLGRSL
TRFDIWE
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