| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0818 |
|---|
| Symbol | |
|---|
| ID | 5612004 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 971985 |
|---|
| End bp | 973091 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640931666 |
|---|
| Product | succinylglutamate desuccinylase/aspartoacylase |
|---|
| Protein accession | YP_001472557 |
|---|
| Protein GI | 157373957 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3608] Predicted deacylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.000157048 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGTTA CCCAATCGTC GCTTAAGATA GGTGAATTGG CCACGGGTCC AGATCTTACG
GTTCCGATAT TCAGCTTAAA GGCTGAAAAA GCAACGGCGC CGAGTGTCTA TATTCAAGCC
AATGTTCATG GTGCCGAGGT GCAGGGTAAT GCCGTTATTT ATCAGCTGAT GCAGCTGTTA
GAAGGGTATA GCTTATGTGG TGATATCACA CTTGTTCCCT TGGCTAACCC TTTAGGGATC
AATCAAAAGA GTGGTGAGTT TACCTTAGGC CGTTTCGATC CCATTACCGG TGTGAATTGG
AATCGGGAAT ATTTAGATCA TAAGTTAGAT GTTGCAGTCT GGTATGAAGC ACATCAAGAA
CTGAGTAACC CAGAGATCTT TATTCGTTTC AGAGAGATGC TGGTCGAGGC TTGTCATCAG
CGCCTGTCCG GCGAATGGGG CGTCACCTCT GGACATCAGC AAGCGGTTAA CCTTCAGCTG
ATGGCACATA AGGCTGATAT CGTCTTAGAC CTTCACACAG GTCCAAAGTC CTGTAAACAC
CTCTATTGTC CTGAATATGA GGCCGACGCT GCATCGCTTT TCTCTATTCC CTATACCTTA
CTTATTCCCA ATGAGTTTGG TGGTGCTATG GATGAGTCTG TTTTTTGTCC ATGGTGGCAG
CTAAGTAACC ATATGAACGC TATTGGCCGT GAATGTAAGG TGCCAGTTTC AGCCTTTACC
TTGGAGTTAG GACCTCAGGA GTACATTAAC CTCGAGGATG CGCTTGTTGA TGCTAAAGGG
ATTTTAGCTT ACCTGAGTTT CCGTGGCGTT ATCGCTCAAG AAGTTGAGCC TGCAAAGATG
TCACGTTATG CCTGCTATCT TAAAGATTAT AAAAAGTATC ATGCGCCTAT GGGAGGAATG
GTGGAATATC TGGCAAGGCT AGGCGAACCC CTTGAGGCTG GAAGCCCGTT GGCAAATATT
CTTCGGCTGG ATCTTTATGG TAGTGAACGT GTGCTTACGC CACTGAGTCT GAGTCAGGAC
TGTGTGCCTA TTTTACATTT TGCCTCAGCA TCTGTGTATC AAGGAACTGA GATGTATAAG
GTGATGACGC AGGTGTTTGA GATATAA
|
|---|
| Protein sequence | MSVTQSSLKI GELATGPDLT VPIFSLKAEK ATAPSVYIQA NVHGAEVQGN AVIYQLMQLL
EGYSLCGDIT LVPLANPLGI NQKSGEFTLG RFDPITGVNW NREYLDHKLD VAVWYEAHQE
LSNPEIFIRF REMLVEACHQ RLSGEWGVTS GHQQAVNLQL MAHKADIVLD LHTGPKSCKH
LYCPEYEADA ASLFSIPYTL LIPNEFGGAM DESVFCPWWQ LSNHMNAIGR ECKVPVSAFT
LELGPQEYIN LEDALVDAKG ILAYLSFRGV IAQEVEPAKM SRYACYLKDY KKYHAPMGGM
VEYLARLGEP LEAGSPLANI LRLDLYGSER VLTPLSLSQD CVPILHFASA SVYQGTEMYK
VMTQVFEI
|
|---|
| |