Gene Ssed_0742 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0742 
Symbol 
ID5611007 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp884247 
End bp885938 
Gene Length1692 bp 
Protein Length563 aa 
Translation table11 
GC content46% 
IMG OID640931586 
Producthypothetical protein 
Protein accessionYP_001472481 
Protein GI157373881 
COG category 
COG ID 
TIGRFAM ID[TIGR01905] doubled CXXCH domain 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.345511 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATGTAC AAATTCCCTT TAAAAAACTA GCACTTGCCA GCATGATAAC CATGTTGGTA 
GCGTGTGGTA GTGATAATGA TAATGACGAA ATTACACTAC CGGTAAATAA CGCCCCCGTT
GTCGTTGGTG ACACAGCTAC AGTAACGGTT TCTGAAGTGG TGACTATCGA TGTATTGGCC
AACGATACCG ATGCAGATGG TGATACCCTA TCAATCGTAT CTGTTGACTC AGACAGCGCC
GTTATCAACG CCGGAAAAAT TGATTTCACA GCTGGTGCAA CCGCAGGCGA AGTGAAGTTT
AACTATACCA TTACCGATGG TACCGATGAG GCGACAGGCG AAGTTACTGT AACGGTCGAA
GCACTGCCTG AGCCTGAAGT ACTGGCTTAT GTCGGCTCTG CAGCTTGTGC AACGTGTCAC
AGCGGCAAGC ACGAATCATT TGCTAAGACT GGTCACAACT TTAAGATTAT TAAAAACCCT
GGAAATGATG CTCCTGTATT TCCGTATACC CCAGCAACAA CCATTACTGG CGCTATCGAT
CTATTGGTCG ATTCAACACC AAATAATGAT TTAGGTGCAC CAACAAGTTA TGACGAAGTC
TCATATACAG TCGGTGGTTA CGGTTGGAAA ATGCGTTGGT TAGACAAAGA TGGCTACATC
GTCACCGGTA AGAATGTTCA ATATAACATT CGTAATGCTG AAGGTGAGTT GAATATTCCT
GATAATCACC CAGGCGATGC CGATGTTATG GGCGATTACA AGACTACCGA GTTCAATTAT
AAATATAGCT GTGGTAACTG TCATACAACG GGTTGGAAGC GCACTACTGA TGTAGCTGGC
GGGGATACTC GTAATCCAGA TCGCCAAGAT GGCCTTCCAG GCATGAATGG TACCTTTGCA
GAGCAAGGCG TTCAGTGTGA ATCTTGTCAT GGTGCGGGTA GTTTCCACGT CAAAGCACCG
TCAAAAGACA ATATCACTAA GGTTGCAGTT GCACGTACTA CCGATGACTT CTTAGCTGAA
GATATGGCTT ACGGTAAGGC TGTTACTTGT GCCGAATGTC ATACTCGCGA TGGTGAGAAA
GATTATCCAA CATTTGTCAG CCATTATAAC GACGCGTTCC CTAGCGGTAG TAAAGTGGGT
GGACGAATCA TCTCCAGCAG CAGATTATCG AAGCATCACC AAACCGGTGA TGAGATGTTA
GGTGTTGTTC CGGAAGACCA TGGCACTTAC AAAGCGGGTG ATGAAATTGG TCCTAAGAGC
GGCATGGCGT GTACCTCTTG TCATGATTCT CACAAATCTA CCTTGAATGC AGATAGTGCC
GATGGCCTAC ACACTGGAGC TGTTAAAGCG TGTACAGATT GTCATAATGC TACTGAAGGT
CCATTGAAAA CCAAAGAGTT TGCTCAGAAT ACACATGCTG CAAGTTTCCA TGCGGATGCT
GTGTGTACCG ACTGTCATAT GCCTAAGCTC GCTAAGAGTG CTATTAAGAC CGCGCCAAGA
CAAGGTGGAG CAGATGTGGT ATTTGGTGAT GTGAAGTCTC ACTTATTCAC TATCGACCTG
GACCCTACAG CTAAGCAGTT TACCGAAGAT GGTAAGTTTC AAATGCCTTG GGCAACCGCT
GAGTTCACCT GTGGTAACTG TCACGCTGAC TATAACGAGA GAGCTGTAGC ACTACCTAAG
ATTCATCTGT AA
 
Protein sequence
MNVQIPFKKL ALASMITMLV ACGSDNDNDE ITLPVNNAPV VVGDTATVTV SEVVTIDVLA 
NDTDADGDTL SIVSVDSDSA VINAGKIDFT AGATAGEVKF NYTITDGTDE ATGEVTVTVE
ALPEPEVLAY VGSAACATCH SGKHESFAKT GHNFKIIKNP GNDAPVFPYT PATTITGAID
LLVDSTPNND LGAPTSYDEV SYTVGGYGWK MRWLDKDGYI VTGKNVQYNI RNAEGELNIP
DNHPGDADVM GDYKTTEFNY KYSCGNCHTT GWKRTTDVAG GDTRNPDRQD GLPGMNGTFA
EQGVQCESCH GAGSFHVKAP SKDNITKVAV ARTTDDFLAE DMAYGKAVTC AECHTRDGEK
DYPTFVSHYN DAFPSGSKVG GRIISSSRLS KHHQTGDEML GVVPEDHGTY KAGDEIGPKS
GMACTSCHDS HKSTLNADSA DGLHTGAVKA CTDCHNATEG PLKTKEFAQN THAASFHADA
VCTDCHMPKL AKSAIKTAPR QGGADVVFGD VKSHLFTIDL DPTAKQFTED GKFQMPWATA
EFTCGNCHAD YNERAVALPK IHL