Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0742 |
Symbol | |
ID | 5611007 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 884247 |
End bp | 885938 |
Gene Length | 1692 bp |
Protein Length | 563 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640931586 |
Product | hypothetical protein |
Protein accession | YP_001472481 |
Protein GI | 157373881 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR01905] doubled CXXCH domain |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.345511 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATGTAC AAATTCCCTT TAAAAAACTA GCACTTGCCA GCATGATAAC CATGTTGGTA GCGTGTGGTA GTGATAATGA TAATGACGAA ATTACACTAC CGGTAAATAA CGCCCCCGTT GTCGTTGGTG ACACAGCTAC AGTAACGGTT TCTGAAGTGG TGACTATCGA TGTATTGGCC AACGATACCG ATGCAGATGG TGATACCCTA TCAATCGTAT CTGTTGACTC AGACAGCGCC GTTATCAACG CCGGAAAAAT TGATTTCACA GCTGGTGCAA CCGCAGGCGA AGTGAAGTTT AACTATACCA TTACCGATGG TACCGATGAG GCGACAGGCG AAGTTACTGT AACGGTCGAA GCACTGCCTG AGCCTGAAGT ACTGGCTTAT GTCGGCTCTG CAGCTTGTGC AACGTGTCAC AGCGGCAAGC ACGAATCATT TGCTAAGACT GGTCACAACT TTAAGATTAT TAAAAACCCT GGAAATGATG CTCCTGTATT TCCGTATACC CCAGCAACAA CCATTACTGG CGCTATCGAT CTATTGGTCG ATTCAACACC AAATAATGAT TTAGGTGCAC CAACAAGTTA TGACGAAGTC TCATATACAG TCGGTGGTTA CGGTTGGAAA ATGCGTTGGT TAGACAAAGA TGGCTACATC GTCACCGGTA AGAATGTTCA ATATAACATT CGTAATGCTG AAGGTGAGTT GAATATTCCT GATAATCACC CAGGCGATGC CGATGTTATG GGCGATTACA AGACTACCGA GTTCAATTAT AAATATAGCT GTGGTAACTG TCATACAACG GGTTGGAAGC GCACTACTGA TGTAGCTGGC GGGGATACTC GTAATCCAGA TCGCCAAGAT GGCCTTCCAG GCATGAATGG TACCTTTGCA GAGCAAGGCG TTCAGTGTGA ATCTTGTCAT GGTGCGGGTA GTTTCCACGT CAAAGCACCG TCAAAAGACA ATATCACTAA GGTTGCAGTT GCACGTACTA CCGATGACTT CTTAGCTGAA GATATGGCTT ACGGTAAGGC TGTTACTTGT GCCGAATGTC ATACTCGCGA TGGTGAGAAA GATTATCCAA CATTTGTCAG CCATTATAAC GACGCGTTCC CTAGCGGTAG TAAAGTGGGT GGACGAATCA TCTCCAGCAG CAGATTATCG AAGCATCACC AAACCGGTGA TGAGATGTTA GGTGTTGTTC CGGAAGACCA TGGCACTTAC AAAGCGGGTG ATGAAATTGG TCCTAAGAGC GGCATGGCGT GTACCTCTTG TCATGATTCT CACAAATCTA CCTTGAATGC AGATAGTGCC GATGGCCTAC ACACTGGAGC TGTTAAAGCG TGTACAGATT GTCATAATGC TACTGAAGGT CCATTGAAAA CCAAAGAGTT TGCTCAGAAT ACACATGCTG CAAGTTTCCA TGCGGATGCT GTGTGTACCG ACTGTCATAT GCCTAAGCTC GCTAAGAGTG CTATTAAGAC CGCGCCAAGA CAAGGTGGAG CAGATGTGGT ATTTGGTGAT GTGAAGTCTC ACTTATTCAC TATCGACCTG GACCCTACAG CTAAGCAGTT TACCGAAGAT GGTAAGTTTC AAATGCCTTG GGCAACCGCT GAGTTCACCT GTGGTAACTG TCACGCTGAC TATAACGAGA GAGCTGTAGC ACTACCTAAG ATTCATCTGT AA
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Protein sequence | MNVQIPFKKL ALASMITMLV ACGSDNDNDE ITLPVNNAPV VVGDTATVTV SEVVTIDVLA NDTDADGDTL SIVSVDSDSA VINAGKIDFT AGATAGEVKF NYTITDGTDE ATGEVTVTVE ALPEPEVLAY VGSAACATCH SGKHESFAKT GHNFKIIKNP GNDAPVFPYT PATTITGAID LLVDSTPNND LGAPTSYDEV SYTVGGYGWK MRWLDKDGYI VTGKNVQYNI RNAEGELNIP DNHPGDADVM GDYKTTEFNY KYSCGNCHTT GWKRTTDVAG GDTRNPDRQD GLPGMNGTFA EQGVQCESCH GAGSFHVKAP SKDNITKVAV ARTTDDFLAE DMAYGKAVTC AECHTRDGEK DYPTFVSHYN DAFPSGSKVG GRIISSSRLS KHHQTGDEML GVVPEDHGTY KAGDEIGPKS GMACTSCHDS HKSTLNADSA DGLHTGAVKA CTDCHNATEG PLKTKEFAQN THAASFHADA VCTDCHMPKL AKSAIKTAPR QGGADVVFGD VKSHLFTIDL DPTAKQFTED GKFQMPWATA EFTCGNCHAD YNERAVALPK IHL
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