| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0732 |
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| Symbol | |
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| ID | 5611675 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 875663 |
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| End bp | 876622 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931576 |
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| Product | CaCA family Na(+)/Ca(+) antiporter |
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| Protein accession | YP_001472471 |
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| Protein GI | 157373871 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0530] Ca2+/Na+ antiporter |
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| TIGRFAM ID | [TIGR00367] K+-dependent Na+/Ca+ exchanger related-protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.23043 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTATTTA ATATTTTCAT GCTTATCGCT GGATTGGGTG CCCTGGTTTG GAGTGCTGAC
AAGTTTGTTT ATGGCGCTGC AGCCTTTGCA AGAAACCTCG GACTTCCTCC AATGTTGATA
GGACTCACCA TTGTCGCGAT GGGAAGCTCC GCCCCAGAGA TGTTCGTTGC CGCAACCGCT
TCAATAGAAG GCATGACAGA TACCGCTATC GGTAATGTAC TGGGGTCAAA TGTTGCCAAC
ATCACTCTCA TCTTAGGTAT CACAGCCCTG TTAGGCGCTA TCTCAGTCAG CTCTCAGACC
CTGCTACGTG AAATCCCATT GATGCTCGGT GCAACGATGA TTGCCGGCTA CTTCCTTCAT
GATGGCTTCC TCACCCGCAT AGAAGGATTC ATGCTGATGG GGCTGTTTTT TATCCTCATG
GGCTATCTTA TCTGGCATGG ATTAACCAAT AAGAATCATG ACCCGCTAGA AGTTGAGGCC
GATGACGAGA TCCCTAAAGG GGTCCCAACA TATAAAGCTG TGCTCTGGTT GGTCGTCGGC
ATCATATTAT TACCCCTTTC GGCTGACTGG ATGGTACAGG GAGCCGTAGG CATTGCCAAA
GCCTATCACC TTTCAGATCT GGTGATAGGC CTGACGATTA TCGCTATCGG TACCAGCTTG
CCCGAACTTG CAGCCTGTGT GGCCGGTGTG CTCAAGAAAG AAGACGATCT GGCAATAGGT
AACATAGTCG GCTCAAACTT ATTCAATATC CTCGCAGTAC TGGCATTACC AGGCATTATC
GCTCCCGGAG AGGTTGATGC CGCGGCCAGC ACGCGAGATT TTTATATGGT ACTCGCAACC
AGCAGCGCCC TAGCTGTTCT CATATTACTT AGTGGACGCG TTCGCCAATT AAAGCCTTGG
CATGGTGTTG TGTTACTTTG TACTTTTGTT GCGTATCAAG CAGTCCTTTT TCTCGCTTAA
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| Protein sequence | MLFNIFMLIA GLGALVWSAD KFVYGAAAFA RNLGLPPMLI GLTIVAMGSS APEMFVAATA
SIEGMTDTAI GNVLGSNVAN ITLILGITAL LGAISVSSQT LLREIPLMLG ATMIAGYFLH
DGFLTRIEGF MLMGLFFILM GYLIWHGLTN KNHDPLEVEA DDEIPKGVPT YKAVLWLVVG
IILLPLSADW MVQGAVGIAK AYHLSDLVIG LTIIAIGTSL PELAACVAGV LKKEDDLAIG
NIVGSNLFNI LAVLALPGII APGEVDAAAS TRDFYMVLAT SSALAVLILL SGRVRQLKPW
HGVVLLCTFV AYQAVLFLA
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