| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0679 |
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| Symbol | |
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| ID | 5612459 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 819464 |
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| End bp | 820942 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931523 |
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| Product | Na+/H+ antiporter |
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| Protein accession | YP_001472418 |
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| Protein GI | 157373818 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1055] Na+/H+ antiporter NhaD and related arsenite permeases |
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| TIGRFAM ID | [TIGR00775] Na+/H+ antiporter, NhaD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATCAA TCCGGCCTTT CAGAGGCAGT GTAGCAGCCT CACAGTTAGC TAAGTTCCTC
CTTTTTCTAG CTGTCCTGTT TTCCCCATCG GTATTTGCCA GCACATCGGG AAGTTCAGGG
CAGTTATTAG ACTTAACTGC CACAACAGCG GGTTATCTCG CGCTGTTTAT TTTTGTCTTC
TCTTATCTGC TGGTCATGGG AGAGGAGGTT ATTCATCTGC GTAAGTCTAA GCCTGTACTT
GTCGCAGCCG GGCTTATCTG GGGCATTATC GGATTTATCT ATGTACAAAA TGGCATGTCA
GAGCTATCAG AGGCCGCCTT TAAACATAAC CTGCTGGACT ATGCAGAGCT GTTTCTCTTC
CTGTTGGTTG CCATGACCTA CATCAATGCC ATGGAGGAGC GCCAACTCTT TGATGCTCTG
AGAGCCTGGA TGATCGGGCG CGGTTTTAGC CTTAGAACTG TGTTTTGGCT AACGGGCTTT
ATGTCGTTTT TTATCTCTCC CATCGCCGAT AACCTGACCA CGGCCCTGCT TATGTGCGCC
GTTGTCATGA AGGTCGGCGG TATCAACCAC AAGTTTATCT CCTTAGCCTG CATCAATATT
GTCATCGCCG CCAACGCCGG AGGCGCGTTT AGCCCCTTCG GCGATATCAC CACCTTGATG
GTGTGGCAAA AAGGGGTCGT TCAATTTTCA CAGTTTATAG ACCTGTTTAT CCCATCACTG
GTGAACTACA TTGTTCCTGC GATCATAATG AGCCTGTTCG TTGTTAATCG CACCCAAAAG
GTGCAAGAAG AAAAAGTGAT CATGAAACGC GGGGCTAAAC GGATCGTCGC TCTGTTTTTA
CTCACCATAG CAACCGCGGT GTGCACCCAT ACCTTCCTGG GACTGCCTCC GGTGCTGGGC
ATGATGACGG GACTCGGTTT CCTGCAATTT TTCGGTTTCT TCCTGCGTAT GACCTTCGAT
AAATCGGTGG CAAAAAAGCG AAAACTAGCC GAGAGAGCCC AGGATGAGAA ACGTCTTACC
TATCTGGGAC ATGTGGTTCC TTTCGATGTG TTCACCCGCA TCGCCAGAGC CGAATGGGAC
ACCCTACTAT TCTTCTACGG TGTGGTTCTT TGTGTCGGTG GTCTTGGCTT TATGGGCTAT
CTGAGCCTAG TGTCCGAGGC CATGTATACC CATTGGGATG TCACCTACGC TAACATCGCC
ATCGGCGTCC TGTCGGCCAT AGTAGATAAC ATACCGGTGA TGTTTGCCGT GCTGACCATG
AATCCGGATA TGGGGTTAGG CCAGTGGCTG CTGGTCACCT TAACCGCCGG GGTTGGAGGT
AGCCTGCTCT CGATTGGCAG CGCGGCCGGT GTGGCCCTGA TGGGACAAGC TCACGGCGTC
TACACCTTCG CGGCGCATCT TAAATGGACT CCGGTTATCG CACTGGGTTA CGCGGCCAGT
ATTCTGGTGC ACCTCTGGCT CAATGCATCC CTGTTTTAA
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| Protein sequence | MKSIRPFRGS VAASQLAKFL LFLAVLFSPS VFASTSGSSG QLLDLTATTA GYLALFIFVF
SYLLVMGEEV IHLRKSKPVL VAAGLIWGII GFIYVQNGMS ELSEAAFKHN LLDYAELFLF
LLVAMTYINA MEERQLFDAL RAWMIGRGFS LRTVFWLTGF MSFFISPIAD NLTTALLMCA
VVMKVGGINH KFISLACINI VIAANAGGAF SPFGDITTLM VWQKGVVQFS QFIDLFIPSL
VNYIVPAIIM SLFVVNRTQK VQEEKVIMKR GAKRIVALFL LTIATAVCTH TFLGLPPVLG
MMTGLGFLQF FGFFLRMTFD KSVAKKRKLA ERAQDEKRLT YLGHVVPFDV FTRIARAEWD
TLLFFYGVVL CVGGLGFMGY LSLVSEAMYT HWDVTYANIA IGVLSAIVDN IPVMFAVLTM
NPDMGLGQWL LVTLTAGVGG SLLSIGSAAG VALMGQAHGV YTFAAHLKWT PVIALGYAAS
ILVHLWLNAS LF
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