| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0677 |
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| Symbol | |
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| ID | 5612827 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 817848 |
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| End bp | 818732 |
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| Gene Length | 885 bp |
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| Protein Length | 294 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931521 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001472416 |
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| Protein GI | 157373816 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAATC CACTCTGGCT CAATACCTTC AAAACCTTAA TTGACCTTGG CCACTTCACG
CGAACGGCAG AGAAGCTTCA CATGACACAG CCCGGTGTCA GCCAACAGAT ACAAAAACTG
GAAAAAGCCT GTGGTCACTC ACTAATCAAG CGAGAGAAGA AGAGTTTTGA GCTCACTGAG
CAGGGAAGAT TGGTTTATGG GTATGCACTT AAGATAGCCG AAGATGAAGC TAATCTGATA
GAGACACTCG GCTTCGACAA CCCCTATGCG GGACAATGTA AGCTCTCCTG TTCAGGCTCT
CAGGCCTTGC AGCTGTATCC GGCACTACTT TCACTTCAGC TACAACACCC CGAATTAAGC
GTTCAGCTGG AAGCCGCACC TAATCAGAAA ATTTTGCATG ATCTGCAATC CGGTAAAATC
GACTTAGGCA TAGTGACCCA CACTCCTGAG AGTGGCCTAT ATCGAAGCAC AGTCATAGGT
GAGGAGACCC TATGTTTAGT CCTGCCCAAA CAATATGAAA ATAGAGGTAT TGACCCGGAG
CGACTCATCG AGTGTGGATT AATCGATCAT CCGGATGCAA AACATTACCT GTCGCTTTAC
TTCGAACACT GCGGAGAGAA GGCGTTAGCC AAGATGAGCC AAGATGAAGT GCCTAAGTCC
GGCTACATCA ATCAGGTTAA CCAGATACTG CTTCCCGTTG CGAAAGGACT CGGCTTTACC
GTGCTGCCCG AAAGTGCGGT CAAAAACTTC CCTCTCAGAG ACAAGCTCTA TATTGCTCAC
ACGGCCAAGC AGGTGAAAGA GACCCTTTAT CTGGTGCAGA AACGTAACCG AAATTTACCT
TCCCGCTATC AAACAGTGAG CCAACTGCTG CGCAGCATTA TCTAG
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| Protein sequence | MLNPLWLNTF KTLIDLGHFT RTAEKLHMTQ PGVSQQIQKL EKACGHSLIK REKKSFELTE
QGRLVYGYAL KIAEDEANLI ETLGFDNPYA GQCKLSCSGS QALQLYPALL SLQLQHPELS
VQLEAAPNQK ILHDLQSGKI DLGIVTHTPE SGLYRSTVIG EETLCLVLPK QYENRGIDPE
RLIECGLIDH PDAKHYLSLY FEHCGEKALA KMSQDEVPKS GYINQVNQIL LPVAKGLGFT
VLPESAVKNF PLRDKLYIAH TAKQVKETLY LVQKRNRNLP SRYQTVSQLL RSII
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