| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0640 |
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| Symbol | |
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| ID | 5613757 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 776993 |
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| End bp | 778357 |
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| Gene Length | 1365 bp |
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| Protein Length | 454 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931485 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_001472380 |
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| Protein GI | 157373780 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.690668 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGACA GACACGGGCT GCTTACACAG CCAATTGGTC GTGTACTGCT AAATATGAGC
CTCCCAAACC TGATTGGTAT CTTAACCGTT CTGGGGTTCA GCCTCGTCGA CACCTTTTTT
ATCAGCCAAT TAGGTACAGA ATCACTGGCT GCGATCAGTT TTACTTTCCC GGTAACCTTA
GTTATATCCA GCATAGCCAT AGGCATAGGT GCCGGGGTAT CGACTAATTT AGGCCGGCTT
ATCGGCAGCG GACAAGCACC GAAAGCTAAG GTATTTTTGC ATGACTCACT GCTGCTTACC
TTCTTTTTAA CTGCATTAAT CTCCCTGCTA GGTAGCCTGT GTATCGGCCC GCTGTTCACT
CTGCTTGGCG CCAATGAAGC CAGCTTGCCT TTGATCTACG ATTACATGCT TATTTGGTAT
CTGGGCGCCC CTATCTTAGT GCTACTCATG GTAGGGAATC AGGGGCTGCG TGCCACCGGT
GATACCCACT CTCCGGCGCA GATCATGATG CTGGCAGCAC TGATAAACCT AATTTTAGAC
CCCTTACTGA TCTTCGGGAT CGGACCCTTC CCGCGCTTAG AGATCCAAGG CGCGGCCATT
GCCAGCGTGA TCTCCTGGGT CGTCGCCCTG TCGCTGTCAA GTTACCTCTT GATATTCAAG
CGCCACCTGG TGGAGTTTGC AGCACTTAAT TTGAGCAGAC TCAGGTGTAA CTGGAAGCAG
TTGGCTCATA TCGCTCAGCC TGCGGCCTTG ATGAACCTGT TAAACCCACT GGCTAATGCC
ATGATCATGG CCATGCTGGC TCGTATCGAT CATGGTGCCG TTGCCGCCTT CGGTGCCGGT
ACAAGGCTGG AATCGGTACT CTTGATCGTC GTGATGGCGC TCTCTTCTAG TCTGGTGCCC
TTTATCGCAC AAAACCTGGG AGCCGGGCAG ACCGAACGCG CCCGTGAAGC GCTGCTGCTA
TCGCTAAGGT TTGTGCTGGT ATTTCAAACC TTGCTGTACC TGCCGTTATG GTTTTTTGCC
GAGCCCATCG CGCATATTTT CAGTAGTGAT CCACAAGTCA TAGAGTGGTT AACCTTCTAC
ATCTTAATGC TACCGGCCGC CTATGGTCCG CTCGGCATCG TTATTCTGAT GGCAACCTCA
CTCAACGCCT ATCACAGGCC CATGTGTTCG CTTGTTCTCA ATGTGTGTCG ACTGTTTCTG
ATCATGTTGC CGTTAGCCGC ATTGGGCTCC TATTTAGGTG GAGTGAAAGG CTTACTATTG
GCACTACCGA TCACGAACAC TATCATGGGG ATCGCCTGCT ATATTCTGGC AACTAAGGTC
TCTGAACCCG AAAAGAGCCC TCAGCCAGAC GTAGAAAGTA AGTAG
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| Protein sequence | MKDRHGLLTQ PIGRVLLNMS LPNLIGILTV LGFSLVDTFF ISQLGTESLA AISFTFPVTL
VISSIAIGIG AGVSTNLGRL IGSGQAPKAK VFLHDSLLLT FFLTALISLL GSLCIGPLFT
LLGANEASLP LIYDYMLIWY LGAPILVLLM VGNQGLRATG DTHSPAQIMM LAALINLILD
PLLIFGIGPF PRLEIQGAAI ASVISWVVAL SLSSYLLIFK RHLVEFAALN LSRLRCNWKQ
LAHIAQPAAL MNLLNPLANA MIMAMLARID HGAVAAFGAG TRLESVLLIV VMALSSSLVP
FIAQNLGAGQ TERAREALLL SLRFVLVFQT LLYLPLWFFA EPIAHIFSSD PQVIEWLTFY
ILMLPAAYGP LGIVILMATS LNAYHRPMCS LVLNVCRLFL IMLPLAALGS YLGGVKGLLL
ALPITNTIMG IACYILATKV SEPEKSPQPD VESK
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