| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0595 |
|---|
| Symbol | |
|---|
| ID | 5610337 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 725880 |
|---|
| End bp | 727535 |
|---|
| Gene Length | 1656 bp |
|---|
| Protein Length | 551 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640931440 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_001472335 |
|---|
| Protein GI | 157373735 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0578] Glycerol-3-phosphate dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.492849 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACCC TGACTCAGGC GTCGATCCAG GCCCGTGAGG CGATCGTCGT TGTAAAAGCT
GGTGAGCTAG CCTCCGAGTA CGATCTTGTC GTGATCGGTG GCGGGATCAC TGGGGCGGGG
ATATTTCATC TGGCTGCGAG CCAAGGGTTA AAGGTGCTGC TGGTCGAACA GCAGGATTTT
GCATGGGGCA CATCGAGTCG TTCATCTAAG ATGGTCCATG GTGGGTTACG TTATTTGGCT
GCTGGCCAAT GGCGAATGAC GCGGGATACG GCCAGACAGA GGGAGGCGCT GCTTGCCGAA
CTGCCCGGAT TGGTCGAATT GATGCCCTAT ATGATGTTGC ACCGACAGGG GGATTTTCCC
TCGGCGGCGC TGTTTAAGCG GGTACTGTCA ATCTACGATA AACTCGCGGG ATGTGATTAC
CATAAGCCCC TCACACTCGA GAAGGCCCAA ACCTGGCTGA CTGAACTCTC GTTTGATGGG
GTAACCGGAG TGAGTCTGTT TGCCGATGGG GTCACCGATG ATGCCCGCTT AGTGCTGCGT
CTACTTCAGG ATGGTGTTCT CGCCGGGGGC CAGGCGCTTA ATTACGCCAA AGTCACCGGA
CTTATCGAGT CAGAGAATGG GATCTCGGGG ATCGAACTGG AATTGGATGA GGGAAAGCAT
AAGATAGGCG CCAAGTGCGT CATCAATGCG ACCGGCAGCT GGGCATCACA GCTTCATCCA
CTCGAGAAGG GGCTGCTCAG GCCCTTGAGA GGCAGTCATC TGGTACTGCC TTTCGAGCGA
CTCCCTGTGT CTGCATGCAT CACCTTCTTT CATCCTATCG ATAAACGCCC CGTCTATATC
TATCCATGGC AGGGCTGTAC CGTGATCGGC ACAACCGATC TGGATCATGA CCAAGGGATC
GAAAGTGAAC CGGGAATAAC CCGAACCGAA GTGGACTATC TGCTGCAGCT GACCCGTAAC
TATTTCCCTG ATAAAGAGAT TGGTGAGGAG GATGTGATCA GTTGCTGGAG TGGCATCAGA
CCGATATTGA GTTCATCTAC CGATACCGCC CCCTCCAAGG AGTCCCGTGA ACATGTTATC
TGGTCGAAAC CCGGCCTTAT CTCGGTCACC GGAGGCAAGC TGACCGGTTT TCACCTGATG
GCTGAAGAGG TACTTGAGAG TATCAAGACT CAATTTCCCG CTATGATGAA GGATATAAAA
CAGGCTAAGT TTAGTCAGCC TGTTATGGGT TATGCCGATA AGCGCCTCAT CGGATATTTT
GGCCATTTTG CGACAAGTAT TTCTGAGATG AAAAATAATC AGCAGATCGG TATAAGCCGC
TGTCAGTGGC GGGAGTTAGA GTGGTCTCTG CTCAACGAGA GTGTTGTACA TCTCGACGAT
CTCTTGCTTC GACGCACCCG TTTGGGGTTA TTGTTAGGAG GTGGCATTAT CAAGTATCGC
GAGCAAATTC TCGCTCTGTG TTGTCAATCT CTGAACTGGT CTGAATCGAT GGCTGAGCAG
GAGTGGCAGA GATTTGAGCT GATCTTCTCA ACATACTACT CTCTGCCAAA CAAAGACAAG
CCGGCAAGTG CCTACAGCCA GTTAAGTGCC GGCAGCCAAT CAAGTACAGC TAACTCACCA
GATACTGACA ACTTACTAAG TACAGAAACT TTATGA
|
|---|
| Protein sequence | MKTLTQASIQ AREAIVVVKA GELASEYDLV VIGGGITGAG IFHLAASQGL KVLLVEQQDF
AWGTSSRSSK MVHGGLRYLA AGQWRMTRDT ARQREALLAE LPGLVELMPY MMLHRQGDFP
SAALFKRVLS IYDKLAGCDY HKPLTLEKAQ TWLTELSFDG VTGVSLFADG VTDDARLVLR
LLQDGVLAGG QALNYAKVTG LIESENGISG IELELDEGKH KIGAKCVINA TGSWASQLHP
LEKGLLRPLR GSHLVLPFER LPVSACITFF HPIDKRPVYI YPWQGCTVIG TTDLDHDQGI
ESEPGITRTE VDYLLQLTRN YFPDKEIGEE DVISCWSGIR PILSSSTDTA PSKESREHVI
WSKPGLISVT GGKLTGFHLM AEEVLESIKT QFPAMMKDIK QAKFSQPVMG YADKRLIGYF
GHFATSISEM KNNQQIGISR CQWRELEWSL LNESVVHLDD LLLRRTRLGL LLGGGIIKYR
EQILALCCQS LNWSESMAEQ EWQRFELIFS TYYSLPNKDK PASAYSQLSA GSQSSTANSP
DTDNLLSTET L
|
|---|
| |