| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0592 |
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| Symbol | |
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| ID | 5609785 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 721346 |
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| End bp | 722806 |
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| Gene Length | 1461 bp |
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| Protein Length | 486 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640931437 |
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| Product | methyl-accepting chemotaxis protein |
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| Protein accession | YP_001472332 |
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| Protein GI | 157373732 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.774563 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00134622 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACGCCAC TGGCAATCTG GCGGGCGATG TTTATGCCTG AATCCCATCA ATGGCGACCG
GAGCAGTTAC GCTTCGTCGA TACCTTGATG TTCTTTACCT TGCTCTCTCT TTTTACCGGT
CTTTATAGCC TCTTCAAATG GCTGCAACAC GATCACACTC TCCTTATTTA TACCTCATTT
CTTCTTATCG GCGCCGAGCT GTTAGCCGGG GCGATAGTGC GTTTTGGCCG TATGCCGGTG
TTGGCCCTCA ACGTCGGATT TTTTGGCATG GTCGTGCATG CGCTGAATAT GATCTATCAG
GGTGGAGGGG TATTGAGTTC GACTCAGACC CTGTGGATTC CGGTGTTAAT CATCTCCTTC
TTCCTCACCG CTAATCTCTT GATGGCAACG CTCTGGAGTC TTGGTGTAAT TCTCTTCTCA
TCCAGGATGG TGGCGAATGC ACTGAACGGC GTAGCTATGC CACAGATGGA GCTTTCACCC
TCGGCGCTGG CAACCGAGAC CTGGTCGGGT TTGATAATGC CACTGCTGGT GATCGTGGTC
GCTCAGGGCT TTACCGCTAA GCAGCGCAAC AAGGCGATGA ACGCCGCAGA GAGGGCTCAG
TTTGATACCT TAGCCACGGC AGAAAAGGCA CAGCAGGGAG AGTTGCAACT ATCTGAAGTA
TTAGACAAGG CGGGTGATAA TGCAGGTCAA CTCTCTTTGG TGGCCAATGA GCTCGAGAGT
CAGTCTTTAG ATCTGCATCA ACAGGTCAAC AATCTCAATC AAAATTGTGA ATCCCAGGCG
AGTGCGGCCG AACAGATGAG CCAGCAGCTT CTGAGGATGA CATCGGATAT GGAGCAATCT
GAGCGCTTCG TGACTGAGAT GAGAGAGCGC AGCGAGGTGA TTAACAGACA AGCACAGAGC
AGTGCCGAAT CCTTGGCGGC TTCAACGGAT GCGATCGATA AAATTTTAAT CAGTAATGAA
AAAATCATGT CGGTAGCGGG CTTGATCACT TCTGTGGCGG ATCAGACTAA CCTGCTGGCC
CTGAATGCGG CGATCGAAGC CGCCAGGGCC GGGGAGCACG GTCGAGGGTT TGCGGTCGTC
GCCGAACAGG TTCGTGAACT GTCGGCAAAG AGTAATGCCT CGGCAGTGGA AATAAGGGCC
CTGCTGGATC TCAGTAAACA GGAGGTCAAC CATGGTCAGG TGGTGATACA AGCGACGGCC
AATGAGCTGT CCGGCATTAT CGAACAGGTC AGCGAGACCG TCACAGATGT CAATCAGTTG
GCCGATACCA TGGTGCATCA GGTTCAGGCG GTGCAGGAGT TAAACTCGGC CAGCGCCGAG
GTGGCAAACA GTGTGGTGCA GACCAATCAG GTATCTGAGT CGGTAGCGAC ACAAGGCAAA
CAGCTGACGC AACAGGTCGA TACTCTAAAG GCCCTTGCCG AGGATCTCAG GCTCGCCATG
TTATCAAAGA GTGCTGCATA G
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| Protein sequence | MTPLAIWRAM FMPESHQWRP EQLRFVDTLM FFTLLSLFTG LYSLFKWLQH DHTLLIYTSF
LLIGAELLAG AIVRFGRMPV LALNVGFFGM VVHALNMIYQ GGGVLSSTQT LWIPVLIISF
FLTANLLMAT LWSLGVILFS SRMVANALNG VAMPQMELSP SALATETWSG LIMPLLVIVV
AQGFTAKQRN KAMNAAERAQ FDTLATAEKA QQGELQLSEV LDKAGDNAGQ LSLVANELES
QSLDLHQQVN NLNQNCESQA SAAEQMSQQL LRMTSDMEQS ERFVTEMRER SEVINRQAQS
SAESLAASTD AIDKILISNE KIMSVAGLIT SVADQTNLLA LNAAIEAARA GEHGRGFAVV
AEQVRELSAK SNASAVEIRA LLDLSKQEVN HGQVVIQATA NELSGIIEQV SETVTDVNQL
ADTMVHQVQA VQELNSASAE VANSVVQTNQ VSESVATQGK QLTQQVDTLK ALAEDLRLAM
LSKSAA
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