| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0581 |
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| Symbol | |
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| ID | 5610184 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 707643 |
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| End bp | 709520 |
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| Gene Length | 1878 bp |
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| Protein Length | 625 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 640931426 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_001472321 |
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| Protein GI | 157373721 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.916714 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0449396 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTTTTT TACTGATGAA AAAGTGGCTG ACTTGGTTGG GCTGCGTACT TTTCGTTTTT
AGTACAAATG GATTTGCTAG TGATGCGTTA ACTGAATTAG AACGTGCAGC CAAAGCGGTT
AGCCCGGCTG ACGGTATCGA GTTGTTGAAT AAATTTGATC TAAAAAACAG CAAACTTGAA
GCTGAGCAAC AAGCGAAAGT ATACTATCTC TATGGTCAGC TTTATGAGAA AACCCGTCAA
CTCGATCAAT CAATCGCCAG TTATGACAAA GGCATTGAAT TAGTTAAATA CCTGCCGATT
ACTGATGTGC TTATCGATAG TCATTTAGAG CGTTCATTTG CGTTATATTT GCAATCCAAC
GACCCCGCGG CATATTGCGT CGATAGAAAA CAAGCCCTTG TTTATGCTCG CCTACACCAT
AATTCCGAAT TACTTGCTAA GACCTTAACT CAAAATGCTT TTTGCTTTAA CGAACCCAAG
TCGATACATA AAGGGATTGC CTTGCTCGAT GAAGCGATGG CTATCGTCGA TAAAAACAAC
CTTAATGTAA ATCGTAAAGC GCTGATTTAT AACGCAACAG GCAGCTTGTA TCGCCAAGTA
GGACTACATC GACGTGGTTA TGACAGTTTT GAAAAAGCTT ATCAAACATG GCAAAGCATT
AATGACATTG AAGACATGTT TAATATGCAA TACAACATGT TGAGTGAAGC CATTAGTCTA
GGGCATTGGG ATAAAGCAAG TCAAAGTGTT GAAGCACAGT TTTCTTTGGC AGCCATGTCT
ACAGGCGATA ATGATATGTT GTTTTTTTCT CACTTAAATG CTGGACGTGT AGCATTGCGA
ACGTATGATT ATGATAAGGC TGTTTTACAT TTAGAAAAGG CTGTTTCACT TAATCATACA
ACTCAAGAAA AGTATTTTAT TAGCAGTAAC TACCTCTATT TAGGCCTAGC TTATATGCGA
AGCGGTGAGG CTGAAAAAGC CGCTGATATG GCACGAACCT TTAAACAAGA CGATAGCTTT
GCTGCAAACC AAAAAGCGAT GTTGCTCCAA GCTGATGCCA TCATTGCACT TGATGAGCAT
GACCCAGTTA ATGCACTGAA TAAGCTATTT CAAGTGATAG ATATAGAGAG AGAGATTAAT
CAAAGTGTGA TTGATAATGA GGTGATCAGT TTATCGCTCG ATCATAATTC TGCATTGGCT
GAGTTTGAAA ATGAATTGCT GGGTAATCGT TTAGCCATTA ATGAGTTGAG TTTGGCTTCT
GTAAAAGATA AAGAGCGGAT TAATGAGCTT AAACTAAGTT TGTTTTTTAT TATCGTCACC
GTGCTATTTT GCATTGTTTT ATTTTTATTA ATCTCACGTA GAACGCTTAA AGTGCGTGCG
CAAACCGACT TTTTAACGGG GCTTGCTAAC AGGGGACATA CCTTCAAAAA AGGCCAAAAA
ATCATTGAAA AAACAATTAA GAAGCAACAA CCAGCATCAG TGATTATGTT TGATATTGAT
GACTTTAAAT CGATTAATGA TCGTTATGGG CATCATATCG GTGATTTAGC GATAAAATCC
GTCTCAAAAC GAACCAGGAG ATGGCTTAAG AAGCATGATT TAGTGGGCAG GATCGGCGGT
GAAGAGTTTT TAATTGTGCT TGAAAACACC TCACAAACTG AGGCTTATGA TATTGCTGAC
CGACTTAGAC ATAACATCGA GGAACAATTT TTTCAATTTG ATGATGTAAC TGTTGAGTTA
ACCATTAGTT TAGGTGTCGC AGCATTAAAT GAACATACAA CAACCTTAAT AGGGCTGATG
AAACAAGCGG ATGATGCGTT GTATCGAGCT AAATTCTCAG GTAAGAATAA GGTTTACTTA
GCGGCTGAAT GTGCTTAA
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| Protein sequence | MFFLLMKKWL TWLGCVLFVF STNGFASDAL TELERAAKAV SPADGIELLN KFDLKNSKLE
AEQQAKVYYL YGQLYEKTRQ LDQSIASYDK GIELVKYLPI TDVLIDSHLE RSFALYLQSN
DPAAYCVDRK QALVYARLHH NSELLAKTLT QNAFCFNEPK SIHKGIALLD EAMAIVDKNN
LNVNRKALIY NATGSLYRQV GLHRRGYDSF EKAYQTWQSI NDIEDMFNMQ YNMLSEAISL
GHWDKASQSV EAQFSLAAMS TGDNDMLFFS HLNAGRVALR TYDYDKAVLH LEKAVSLNHT
TQEKYFISSN YLYLGLAYMR SGEAEKAADM ARTFKQDDSF AANQKAMLLQ ADAIIALDEH
DPVNALNKLF QVIDIEREIN QSVIDNEVIS LSLDHNSALA EFENELLGNR LAINELSLAS
VKDKERINEL KLSLFFIIVT VLFCIVLFLL ISRRTLKVRA QTDFLTGLAN RGHTFKKGQK
IIEKTIKKQQ PASVIMFDID DFKSINDRYG HHIGDLAIKS VSKRTRRWLK KHDLVGRIGG
EEFLIVLENT SQTEAYDIAD RLRHNIEEQF FQFDDVTVEL TISLGVAALN EHTTTLIGLM
KQADDALYRA KFSGKNKVYL AAECA
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