| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0566 |
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| Symbol | |
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| ID | 5612470 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 689688 |
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| End bp | 691109 |
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| Gene Length | 1422 bp |
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| Protein Length | 473 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931411 |
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| Product | outer membrane efflux protein |
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| Protein accession | YP_001472306 |
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| Protein GI | 157373706 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.151183 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTTTT CACATATAGC CTTATTGTCG TTAGCGGCAC TAGGGCCTTT CACGGCTGGG
GCGAAAGAGA TGGGGTTCTC TCAAGCTTGG CAACAGCTGT TAACGGTAAG CGATAAGTTG
CAAGCCGGTG CTCAGGAAGT TAACCGCGCC GAGGCCGAGC ATGAAGCCGG AAAGGATCTT
TATCTTCCCT CAATTAGTCT CAACGGAAGC TATACACGAC TCGAAAAGCC GATCGAGTTA
GATCTTAACG ATCTTAACCC TCTCGCCTCT ATGGATCCCA GCACACTCCC GCCGTCTATC
GGTGGTGCCC TTGCCGGTAT ACCAAGCTCT ATGTTTGTCA CCCAATTTAC CGAACAAGAT
ATCTTTCGTT CCAGTCTCCA GGCGATGTGG CCTATCTATA CGGGAGGCAA GATCTCTGCG
GCTCAGGGGA TCCATGCCGC ACATGTGATA GAAAAGGAGC AGCAGTTACA GCTCTCTACC
CGTGATCTCT TTATTCAACT GGTGGATCGC TACTATGGCG TTGCGGTGAC TCAGTCATTA
GCGCAGACCC GTGGTGAATT AGTCTCCTCC CTCGAAGAGC ATGCCAGTCA TGCACAGAAA
CTCGAAGAGC AGGGACAGAT AGCGAAAGTC GAACGGCTCA ATGCGCAAGT TGCACTGGAA
AATGCCAAGG TGAACTTTGC CAGTGCCGTG CGTCAAGCTG AAATGGCAGT TATCGCCCTA
TCACGTATGC TCCATGAACA TGAAGTGGAT ACCACATCCG CGCTGTTTAT GCTCGCCGAC
GCCCCCTCTC TGCCGCACCT GAGTCAACTG ACTCTGGTTC AACATCCTGC GCTGAAACTG
CTCGAAGCGA AAGAGGAGCA GGCCAATGGA TTGATCGACC TGGAAAAAGG TAAGTATCAC
CCTACGGTAT TTCTCTATGG TAATTACACC CTGTATGAAG ACGATAGCCT GTTTTCTAAG
ATGGAGCCTG ATTGGATGCT GGGCGTCGGA GTTAAAGTGC CGTTACTGAG TCGAGACGGA
CGCAGTGGCA AGGTACAGGC GGCTAAGAGT GCATTGCTTC AGGCAAGATA TACCAAGGCA
CAGACCCGGC AAGATCTCAG CCTGCTACTG GATCAAAGTT ACCGTCAGCT GTTACAAGCC
CAAGAGGAGG TATTATCGCT GGAGACCTCT CTTAGTTTGG CACAAGAGAA TAAGCGCCTG
AGAGACCTGG CTTTTCGTCA GGGGCTATCG ACCTCGATCG AAAAGGTCGA TGCAGAACTG
AAGCTTACTG CGGTAGAAAC ACAGCAGCTG GGTGCTAAAT ATCGTTATAT TCAGGCGTAT
GCCAGACTCA TGGCCATCAG TGGCCAATTG GAAGAATTTT TAGGTCGCAG CGTTAGTCAT
CATACTAATG TCGCGATGCA GGAGAGTAAC AATGCAGGCT AA
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| Protein sequence | MKFSHIALLS LAALGPFTAG AKEMGFSQAW QQLLTVSDKL QAGAQEVNRA EAEHEAGKDL
YLPSISLNGS YTRLEKPIEL DLNDLNPLAS MDPSTLPPSI GGALAGIPSS MFVTQFTEQD
IFRSSLQAMW PIYTGGKISA AQGIHAAHVI EKEQQLQLST RDLFIQLVDR YYGVAVTQSL
AQTRGELVSS LEEHASHAQK LEEQGQIAKV ERLNAQVALE NAKVNFASAV RQAEMAVIAL
SRMLHEHEVD TTSALFMLAD APSLPHLSQL TLVQHPALKL LEAKEEQANG LIDLEKGKYH
PTVFLYGNYT LYEDDSLFSK MEPDWMLGVG VKVPLLSRDG RSGKVQAAKS ALLQARYTKA
QTRQDLSLLL DQSYRQLLQA QEEVLSLETS LSLAQENKRL RDLAFRQGLS TSIEKVDAEL
KLTAVETQQL GAKYRYIQAY ARLMAISGQL EEFLGRSVSH HTNVAMQESN NAG
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