| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0554 |
|---|
| Symbol | |
|---|
| ID | 5614064 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 673408 |
|---|
| End bp | 674004 |
|---|
| Gene Length | 597 bp |
|---|
| Protein Length | 198 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640931399 |
|---|
| Product | methylation site containing protein |
|---|
| Protein accession | YP_001472294 |
|---|
| Protein GI | 157373694 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0126112 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.406745 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGTTA ACTCACTCTC GATAACAAAG CGAACAGGTG CTCTTGTGAT AACAAAGGGC
TTTACCTTAG TCGAGCTCGT GGTCGGCATG GTTGTGCTGA GCATCGCCTT GGTCATGCTG
ACCAGCATGC TGTTCCCCCA GGCCGACCGC GCGGCCGAGA CCCTGCACAG GGTGCGCTCC
GCCGAGCTGG CCCATTCGGT GATGAATGAG ATCTGGGGTA AACGCTACGA TCAAAACACC
AACCCCAATG GTGGTGTCCC CGCATGTGGC GCCGCAGCGA GACCCGATCT GGGTCTTCCT
GCAGGCTTGG CTTGTACCGC GCCGGGAGCG CTTGGCCCGG ATACCGGTGA GAACCGTAAC
AGCTATAATG ATGTCGATGA TTACCATGGA CTCAATCAGA ACAGCTTGAT GTTGAATGCC
GCAGTAACAA CAGGAGTTAA TGCTGACACC TACGCCAGTC GCTACCCGAA TTACCTGCTG
GCGGTTGCGG TGACCTATCC CGATACCTCA GATCTGAACC GTAAACTGAT AACGGTTACT
GTGACGACGC CAAGTGGCGA GCAGATCGTC TACAATGCGG TCAGGAGTAA CTACTGA
|
|---|
| Protein sequence | MAVNSLSITK RTGALVITKG FTLVELVVGM VVLSIALVML TSMLFPQADR AAETLHRVRS
AELAHSVMNE IWGKRYDQNT NPNGGVPACG AAARPDLGLP AGLACTAPGA LGPDTGENRN
SYNDVDDYHG LNQNSLMLNA AVTTGVNADT YASRYPNYLL AVAVTYPDTS DLNRKLITVT
VTTPSGEQIV YNAVRSNY
|
|---|
| |