| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0553 |
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| Symbol | |
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| ID | 5610256 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 672951 |
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| End bp | 673418 |
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| Gene Length | 468 bp |
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| Protein Length | 155 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931398 |
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| Product | MSHA pilin protein MshC |
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| Protein accession | YP_001472293 |
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| Protein GI | 157373693 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00995446 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.374252 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGAACAG TCTTGCCACA AAGCGGCTTT ACCTTGGTAG AGCTGGTTAC CACCATCATC
TTGATTGCCA TTCTCTCTGT GGTGGTGTTA CCGCGCCTGA TGACAAGCTC CAGCTACAGT
GCATTCACCC TGCGAGACGA ATTTGTCTCT GAGCTTCGCA AGGCTCAGTT GTTGGCGATG
AATAATGGAG ACTATTGCTA TCGTATCGCC GTAGATACTA CGGGATATCA ACTGCAGGGA
TTTGATAACA CTGGCTGTAC AGGTACCGCT AAGTTGACCG AGACTAAGCA GACATTTGAA
GGGCGCGCCA GCCTGGAATT AGATAGTGAC AGTTCAAAAA GCTTCAAGGT TAATTTCGAC
AGACAGGGGA TCGCTAGCTT AGGCTGTAGC GGGGCCTGTA TCAAGGTGAT TGCCGATGAG
ACCTTAACCA TCAGTATTGA GAGTCAGGGG TATATTCATG GCCGTTAA
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| Protein sequence | MRTVLPQSGF TLVELVTTII LIAILSVVVL PRLMTSSSYS AFTLRDEFVS ELRKAQLLAM
NNGDYCYRIA VDTTGYQLQG FDNTGCTGTA KLTETKQTFE GRASLELDSD SSKSFKVNFD
RQGIASLGCS GACIKVIADE TLTISIESQG YIHGR
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