| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0457 |
|---|
| Symbol | |
|---|
| ID | 5612048 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 570088 |
|---|
| End bp | 570921 |
|---|
| Gene Length | 834 bp |
|---|
| Protein Length | 277 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640931302 |
|---|
| Product | MscS mechanosensitive ion channel |
|---|
| Protein accession | YP_001472198 |
|---|
| Protein GI | 157373598 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3264] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGAAG ATCAACTCGC ACAAGAGCTT GAGCAACTAC AAAATGTCTA TACGCTGATC
ACTGAGTTTT TGGTTCAATA CAGTTTTCGC CTTGTGGGTG CACTATTGAT TTTTCTTATC
GGCCTATGGC TCGCCTCCAA GGTCGCTAAA CTGGTCACAA GACAGTTCGA AAAACACAAT
ATCGACATCA CCCTAAGCAA TTTTGTCAGC AACTTAGTAC GCATTATTAT CGTTGTCATG
GTCGCCATCA TTGCACTGGG AAAGCTTGGG ATAAGCGTCA CCCCTATGAT CGCAGCCATC
GGTGCGGCCT CATTGGGTGC CGGGCTCGCT ATTCAAGGGA TGCTCTCTAA CTATGCCGCC
GGCATTACCA TCATAGTTAC CCGTCCCTTT ATTATCGGTA ATACCATCAC AGTTAAAGAG
GTAACCGGTG TAGTACAAGA TATCCACTTG GGTTTAACGG TGCTGACTAA CGAGGAGGGA
GAGCAGATCA GTATTCCCAA TAAACATATT GTCGGAGAGA TACTGCATAA CTCCTTTGCA
AATAAGCTGG TAGAGACCAA ATTCAACATT AACTATCAAT CAGATCCCGA AGCCGTTATC
GAACTCACCA CAAAAATACT GGCAGAGAGC CCACAGGTCA ATCAAGACAA ACCTGCTCAC
ATAGGTATTA ACGGTTTTAA CACTGTCGGC ATCGAGATAG GTATTCGATA TTGGGTCCCC
ACCGAACGCT ATTACCAAAA TAAATACCAA ACTAACTTAG CCATATATAA GGCGCTTCAC
TCAGCCGGAA TCGAGATCCC ATGCCCGGTA AGAGAAGTTC ATATAGAGAG GTAG
|
|---|
| Protein sequence | MKEDQLAQEL EQLQNVYTLI TEFLVQYSFR LVGALLIFLI GLWLASKVAK LVTRQFEKHN
IDITLSNFVS NLVRIIIVVM VAIIALGKLG ISVTPMIAAI GAASLGAGLA IQGMLSNYAA
GITIIVTRPF IIGNTITVKE VTGVVQDIHL GLTVLTNEEG EQISIPNKHI VGEILHNSFA
NKLVETKFNI NYQSDPEAVI ELTTKILAES PQVNQDKPAH IGINGFNTVG IEIGIRYWVP
TERYYQNKYQ TNLAIYKALH SAGIEIPCPV REVHIER
|
|---|
| |