| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0390 |
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| Symbol | |
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| ID | 5612530 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 454745 |
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| End bp | 455209 |
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| Gene Length | 465 bp |
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| Protein Length | 154 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931222 |
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| Product | hypothetical protein |
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| Protein accession | YP_001472131 |
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| Protein GI | 157373531 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
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| TIGRFAM ID | [TIGR00369] uncharacterized domain 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000484285 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGACTAACC CGATTCAAGA GCAGACACTT CGTCGAGTCG CCGAGGTATT CGATAAACAG
GTTCCCTTCC ATAATTTATT GGGGCTCGAT ATCAAACGCT ATGATCTCGA TGGTGTCGAG
GTCGTTATCA ACATGAAGCC TGAGCTCATC GGTAATATTC ATCAGCAGAT ACTTCATGGC
GGAGTCACGG CTACGGTACT CGATGTTGTT GGTGGTCTCA CGGTTTTTGC GGGTTTGGTT
GCCAGCCGGG AAGACTGGAG CATTGAGGAT CTACAAAGTC GATTGCAAAC ATTAGGCACC
ATAGACCTGC GTGTCGATTA CCTAAGGCCG GGGAGAGGGA TGCAATTTAC CGGCACTGGA
ACTGTGATAC GTGCAGGCAA CCGAGTTTCT GTTTGTCGCA TGGAGCTTCA CAATGAGCAA
GGCTCTCATA TTGCTTTCGG AACAGGGACA TACATGGTGG GTTAA
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| Protein sequence | MTNPIQEQTL RRVAEVFDKQ VPFHNLLGLD IKRYDLDGVE VVINMKPELI GNIHQQILHG
GVTATVLDVV GGLTVFAGLV ASREDWSIED LQSRLQTLGT IDLRVDYLRP GRGMQFTGTG
TVIRAGNRVS VCRMELHNEQ GSHIAFGTGT YMVG
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