| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0321 |
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| Symbol | |
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| ID | 5609587 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 374936 |
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| End bp | 375313 |
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| Gene Length | 378 bp |
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| Protein Length | 125 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931153 |
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| Product | thioester dehydrase family protein |
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| Protein accession | YP_001472062 |
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| Protein GI | 157373462 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0764] 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 43 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00116692 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGATTAAAT CCAAGCTGCC CAGAGTCCTC TCGACAGACA TTCAAGTCGA AGCCGTAGAG
TGGCGCATAT TTATCGACGC TGACTTACCA TTTTTTGACG GCCACTTTCC CGAACAGGCC
GTACTGCCGG GTGTAACTCA ATTAGACTGG GCGATTCGTA TGGGGTGTGA GTATTTCAAT
TACCCTGCTG ACGTTGCCAC GTTAGAAGTG CTTAAGTTTC AGCAGTTAAT GCTGCCAAAC
TCTGAGGTAA GCCTGAAAAT CTCTCAAAAC AGCAGTAAAA CAAAATTGCT CTTTAGCTAT
TTTGATGATG AGAAGCGATT CGCATCGGGC CGGATCTTAC TGGCCTCTCC AGCCCTTGCT
GATATAGAGA ACAGCTGA
|
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| Protein sequence | MIKSKLPRVL STDIQVEAVE WRIFIDADLP FFDGHFPEQA VLPGVTQLDW AIRMGCEYFN
YPADVATLEV LKFQQLMLPN SEVSLKISQN SSKTKLLFSY FDDEKRFASG RILLASPALA
DIENS
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