| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0316 |
|---|
| Symbol | |
|---|
| ID | 5609780 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 367983 |
|---|
| End bp | 370397 |
|---|
| Gene Length | 2415 bp |
|---|
| Protein Length | 804 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640931148 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001472057 |
|---|
| Protein GI | 157373457 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4258] Predicted exporter |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00235423 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATAGATA AATTGGCACT CAGACTGAGT CAATACCCGG CAAGGCTCAA ATTTGCCCTC
TGGGTAATGT TGCTGTGCAT CACCACGTTA ACAGGCATAC AGCTTTGGCA AGGCGGGGCT
AAGATCCAAA GTGATATTTT GGCTATGCTG CCAAAGCTCA AAGAAGACCC CTTAACCGAA
ACCGCCCTCG CGCGGGTCGA AGAACAGCTA TCAAACACTG TCTATATCGC CCTACTCGCC
GAAGATAAAA GCCAAGCCGT TACTGCAGCG AATACATTGA TAGAGAGCCT TTCATCGGAC
AATCGAGATG CATTCGTTGA TATAAGAAGT GCCGATCTCA ATCAGGCTCA GGCACTGAAC
CATTTCTATT TTAATCATAG ATTTAATCTG TTAACTCAAG CTCAGGCAAG CGCCCTCTCA
TCCGGCAAGT TAAGCGAACT GCTCCGGCAG GCTCAGCTTC AGCTCTACAA TGCCTTCGGC
TACGCTAACA GTGGCTTAAT CGCTAACGAC CCTCTACTGC TTTATCCGGA CAACCTGCAG
GCGCTTGCAC CTAAACAAAG ATTACAGGTG CAACAGGGAA TACTGCTGGG CCAATGGTCT
CCTAACGAAA CTGACGAAAG CTCAAAACCG GCGGCTAAGG TGGCCGCAAT AGTGATGGCC
AAAGGATTGG GTAGCGCCTT TAACCCAAAC ACACAAGAAT TACAGATGGC CGTGTTACAA
GAGGCATTCG AGACGGTCGA GTCTCAAAAC AAGCAGGTAG CGTTTCTCAA AGCCGGCGCC
CTGTTTCATG CCAGCGCCGC GACTAAGAGC GCCAAGAGTG AAGTCTCCAC TCTGGGGCTT
GCCTCACTTA TCGGCGTGAG CTTACTCGTC TGGCTCGCCT TTCGCTCCGT CATGCCTCTG
GGCATCGCGT TATTGACGAT AACCACCAGC CTGCTAACAG CGGTAGTGAT GACACTGCTT
ATCTTCTCAG AACTTCACCT GCTGACCTTA GTGTTTGGTA CCAGCCTGAT AGGCATCGCC
ATCGACTATA ATTTTCACTT TTATTGCGAG CGACTGGCTC AAGCAGAAAA AAGTGCCAAC
GAGATAATTA GAAAGATATT TCCGGCGATC ACACTGGCAC TGCTTACCAG TGTATTGGCC
TATTCCGGCA TAGGTCTTGC CCCCTTCCCG GGAATGCAGC AGGTTGCCGT TTTCTGCGCT
GCGGGTCTGT TCGGTGCCTA TATCACCTTA AGCCTAGCCT ATCCGCTACT CGCCTCGGGG
CCACTTCCTT CGGGTGAAAA GCCCCTGTCT ATGGCTGCGG CATACCTGAC AAAATTAAAT
TCCATATCGC GTTTTTTGAA TTATAAAATA GGGGGCGTGT TACTTGCCCT ATCTGTCATC
ATCTCCGCAT TTGGTCTTTA TCAACTCACG AGTGATGATG ATATTCGCAA CCTTCAACAG
AGCCCTGAGT CGGTATCAGA TGAAGAGCAG CAACTCAGAG GTATCCTCAG TGGCGGAACC
GATAATCAAT TTTTGCTTGT TAGAGGAGAG ACTGAAGAGC AATTACTGCA GCGACTGGAA
ATACTCTCCC CCAAGCTAAA CAATGCAGTA GAAAAAGGAT TGATTGGTAA TGCTTTTAGC
CTGAGTACCT ACCTTCCAAG CAGAAGTAAA CAAGAGGATA ATTACCAGCT GCAGGGGCTT
ATTTATCAAC AGAATTTAGC CTCGATTGTT GAAAACCTCG GGCTCGATGA CTCCCTGATT
TCAGACTTAG CAGAGGCGTA TCAAAAAGCC AAAGGAAGCT ATATCGATGC AGAATCCTTT
ATAAGTTCCG ATGCAGGTAA ACTGTTTAAG CCGCTATGGA TAACGCCCAC ACCTTTGCAA
GATCAATACG GGGCCATCGT GCTGCTTGGC GGAATAACCG AGATAGACAA ACTTGAGAGT
TTTTTCTCCA AACTATCCTA CGTTCAGTTG GTAGATAGAG TCGGTGAGAT ATCCGGCGTC
ATGGGCCAGT ACCGACAATT AACCCTCTGG CTACTCGCCA TCGCCATGGC TATAGCGGCT
CTCATTTTCA GCACTCGCTT CGGAATAAAA CTGGCCGCTT TAGTGGTCGC AGTTCCGGCA
CTTTCAGCGG TTTTGACATT GTCACTACTT GGGCTGATAG GGGCTCCTCT CACACTATTT
CATGCTCTGG CACTCATCCT CGTCTTTGGG ATCGGCGTCG ATTACAGCCT GTTTTTTGCC
GAATCCAAAC ACCAGAGTCG AGGCGTGATG ATGGCGGTCT TTATGTCTGC CAGTTCAACC
ATCTTAGCCT TTGGACTGCT GGCATTTAGC AGTACGCCGG CCATACATAG CTTTGGACTG
ACGCTCCTGT TGGGGATTGG CTTCACCTTC GCTCTATCCC CCTTTATTCA AACTTTTACA
AGGACTTTTA AGTGA
|
|---|
| Protein sequence | MIDKLALRLS QYPARLKFAL WVMLLCITTL TGIQLWQGGA KIQSDILAML PKLKEDPLTE
TALARVEEQL SNTVYIALLA EDKSQAVTAA NTLIESLSSD NRDAFVDIRS ADLNQAQALN
HFYFNHRFNL LTQAQASALS SGKLSELLRQ AQLQLYNAFG YANSGLIAND PLLLYPDNLQ
ALAPKQRLQV QQGILLGQWS PNETDESSKP AAKVAAIVMA KGLGSAFNPN TQELQMAVLQ
EAFETVESQN KQVAFLKAGA LFHASAATKS AKSEVSTLGL ASLIGVSLLV WLAFRSVMPL
GIALLTITTS LLTAVVMTLL IFSELHLLTL VFGTSLIGIA IDYNFHFYCE RLAQAEKSAN
EIIRKIFPAI TLALLTSVLA YSGIGLAPFP GMQQVAVFCA AGLFGAYITL SLAYPLLASG
PLPSGEKPLS MAAAYLTKLN SISRFLNYKI GGVLLALSVI ISAFGLYQLT SDDDIRNLQQ
SPESVSDEEQ QLRGILSGGT DNQFLLVRGE TEEQLLQRLE ILSPKLNNAV EKGLIGNAFS
LSTYLPSRSK QEDNYQLQGL IYQQNLASIV ENLGLDDSLI SDLAEAYQKA KGSYIDAESF
ISSDAGKLFK PLWITPTPLQ DQYGAIVLLG GITEIDKLES FFSKLSYVQL VDRVGEISGV
MGQYRQLTLW LLAIAMAIAA LIFSTRFGIK LAALVVAVPA LSAVLTLSLL GLIGAPLTLF
HALALILVFG IGVDYSLFFA ESKHQSRGVM MAVFMSASST ILAFGLLAFS STPAIHSFGL
TLLLGIGFTF ALSPFIQTFT RTFK
|
|---|
| |