| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0296 |
|---|
| Symbol | |
|---|
| ID | 5609748 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 350171 |
|---|
| End bp | 351406 |
|---|
| Gene Length | 1236 bp |
|---|
| Protein Length | 411 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640931128 |
|---|
| Product | arabinose efflux permease-like protein |
|---|
| Protein accession | YP_001472037 |
|---|
| Protein GI | 157373437 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00000135127 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGACCTG ATCACCGGAA CTTCTATAGA GTTACAAGAA TGGCGCATCG CAATCATTTC
CAGCTCCTCT TCGTGATCAA CTTTATCGTT ACCTTGGGTT TTGGGATCTG CGATACCTTC
TTCTCTGTGT ATGTGTTTGA ACTGGGAGGA AGAGGCGCAC TGTTGGCCCT ACCGCTGATA
TCCTACTCAG TGGCAAAAGC AGTTTTCAGC CCTTTTATGG GGCGGTGTTC GGACACCTTC
GGCCCCGAAA AGATAATGCT TGTCTCCCTC ACTATCTACC TGCTGGTCTC AGTTTTATTC
TTAGTCTCTA CCAACCTGTT TATCCTTGCG ATCTCACGCT TACTTCAGGG CGTTGCCTGC
GCCATGTTCA GGCCGGTTAT TGTTTCCTTG GTCAGCGAGT CTGCCATTAA AGAGAAACGC
TCCTCGATTA TGGGGACCTT CGATATCTCT TTCTATGCAG CCCTGTCCTT CGGGCCGATA
GTGGGTGGTT ACATGAAAGA TCAACTGGGG TTCTCGGCCA TATTCTCAGG GGTGACACTC
CTCTGTATCT TAGCCATTTT GCTCTGCACT TGCTGCGTTC GAGATAGTTC GGCTCGTGTC
GCCACCACGC ACTCAAGCCG CAATAAACCG TCATCCCTCA TTCAGCCCAT CATCCGGAGC
CGAAACTTAA GAGGATTACT GGCCTTTATC TTTGGACGAG CCAGCTGCAT CTCTCTTACA
GGCACATTTC TTCCTATTAT TTTAACTGAA GAGCTTAAGT TAACCGGGAC TCAAATAGGG
ATAGTGATGG CCTCAAGCTG TCTCACTATC ACGCTCCTTC TGCGGCCTAT GGGCATGCTT
GCGGATAGGG TTTCTCACGC CATATTAATC ATCCTTGGCG GCATATCTGT CTCAATAATC
TATTTGATCA TTCCCGCCAC ACTCACCTTC ACCCAAATTA TCTTCGCAAC CACCCTCCTC
GGCTTATTTA GCGCCCTGTC ACAGCCCGCC TGCACCGCCA TGCTGGTAGA AGAGGGAACG
CATTACGGCA CAGGCAACAC GGTGGGGATA TTCAATGGTG CAATGAACTT AGGTTTTATT
TTCGGCCCCA TTTTTGGCGC GTTTATCTTG AGTGGCTTCG GAATAGACGC CGTATTTTAC
TCGGCAGGGG TAATAGGCGC TTCAACGATA TTGTTATTTG CCCTAATTAC TCACCCCTCT
CTGCTTTCGC CTGTCGACAG CAGATGCAAA AACTAA
|
|---|
| Protein sequence | MRPDHRNFYR VTRMAHRNHF QLLFVINFIV TLGFGICDTF FSVYVFELGG RGALLALPLI
SYSVAKAVFS PFMGRCSDTF GPEKIMLVSL TIYLLVSVLF LVSTNLFILA ISRLLQGVAC
AMFRPVIVSL VSESAIKEKR SSIMGTFDIS FYAALSFGPI VGGYMKDQLG FSAIFSGVTL
LCILAILLCT CCVRDSSARV ATTHSSRNKP SSLIQPIIRS RNLRGLLAFI FGRASCISLT
GTFLPIILTE ELKLTGTQIG IVMASSCLTI TLLLRPMGML ADRVSHAILI ILGGISVSII
YLIIPATLTF TQIIFATTLL GLFSALSQPA CTAMLVEEGT HYGTGNTVGI FNGAMNLGFI
FGPIFGAFIL SGFGIDAVFY SAGVIGASTI LLFALITHPS LLSPVDSRCK N
|
|---|
| |