| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0277 |
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| Symbol | |
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| ID | 5611300 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 313869 |
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| End bp | 314513 |
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| Gene Length | 645 bp |
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| Protein Length | 214 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931103 |
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| Product | TetR family transcriptional regulator |
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| Protein accession | YP_001472018 |
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| Protein GI | 157373418 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000814335 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000000327176 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAGTAATT GGGAACAGCG TGGGCATTAT CTGATAGAGG TCGCTCAAAG GTGTCTGCAA
GGGCATAAGA CATTCGATCT ATGTCGCTCA CACTTGGTGA AGGCAAGCCA GATCTCTAAA
GGTACTATCT ATAACCATTT CCCCTCTGAG GCCGATCTTA TTGTCGCAGT AGCGTGTGCA
GATTACAGCC GCTGGCTGGA GCAAGCTAAA GAGGATGAGC TCAATTATAG CGATCCCCTA
AGGCGAATCT TATTCCACCA CTGCTGGCGC TTGCGAGATA CTCTATCTAA TCAACGTTTT
GTCATCGAAC GTGTGATGCC AAATGCTGAA ATTTTAGTAC AAGCTACTCA GTATTACCGC
CACCGCTTCG AGAAGCTTTA CTCTCAGTAT GAACTGTGGA ATAAGGGTCT GATTAGCCAA
GTTGGTGATG TTGCCGGTTT CGACAGGGCC GAGTTAGTCG TCAACTATTT ACGCGGCGCC
ATGATAAATA GCGACGATGC CAACAAGCAT AGCGGTGACG TGCAGATGTA TTATCAATTC
AGCTACGCGT TAACCCATCT TATGGGGCAC TCTGATAAAC GTATCCCGGA CAAGATGGAG
TTCTCTGCCT GGTTGGTGCA GGAGAGGGCT GCTTCAGCGG CTTAA
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| Protein sequence | MSNWEQRGHY LIEVAQRCLQ GHKTFDLCRS HLVKASQISK GTIYNHFPSE ADLIVAVACA
DYSRWLEQAK EDELNYSDPL RRILFHHCWR LRDTLSNQRF VIERVMPNAE ILVQATQYYR
HRFEKLYSQY ELWNKGLISQ VGDVAGFDRA ELVVNYLRGA MINSDDANKH SGDVQMYYQF
SYALTHLMGH SDKRIPDKME FSAWLVQERA ASAA
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