| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0266 |
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| Symbol | |
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| ID | 5610489 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 299843 |
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| End bp | 300778 |
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| Gene Length | 936 bp |
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| Protein Length | 311 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931092 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001472007 |
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| Protein GI | 157373407 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0296308 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCTCA TTAAGCTCTC GCGTATCAGC ATGAAGCATT TGATCACCTT GCATGTGATG
TTGGATACCC TAAGTGTGAC CGCCAGTGCC CAGAGGCTAT GTTTAAGTCC GTCTTCAATA
AGTAAAACCC TGGGGCAACT GCGAAATAGC TTGAATGATG AGCTGTTTTA TCGTCATGGG
AATAAGTTGG TTGCGACTCC GTTAGCACGT CGTCTCGGCC CCAGTGTGCA CCAGATGATC
AATGATATGA ATCAGATCAT GACACAAGAG GTTTTCGACC CCGCTCGTTA TCAGGGACGT
TTCTCGTTAG CCATGCGTGA GAGTACGTTT GAGCTATTGG CGGCTAAGTT AAGTGCCCAT
GTGTTGGCGC TGGCACCCAA TATTCGTTTG GATATTTGGT CAAAAGACAG TGTCGGCTTC
GATGGCCTGG CGAAAGGGAC CTTGGATTTC ATTATCTTGC CTCATGATCG CAGTCAGCCT
CCGAGTACTC ACAGCGATCT TGTGTGGGAG ACTCTGACTA ATGATGAGAT GGTTTGCCTG
ATGAGCCCGG AACATCCTTT GGTGAAAAAA GGCAATAAAG AGCAGCCATT TACCTTAGAT
GATTATCTGA GCTATGGTCA TATCGGCATA ACGGATACGG ATCTTAATAC GCCATTTTTT
GAAATGCAGC TGGCACAGCA AGAGCTGCAG CGTAAAGTTG CTATCTCTGT GCCGGATTTT
GGTGGTGCCG CCTTGATGTG TCACCACAGT GAGTTGTTGT TTACCTGCTC CCGTCGATGG
GCCGAAACGG CTTTTCAGGC GAAAGGTTTA CAGATAAAGC CTCTGCCCTT TAATTATGGC
GAGGTGGTGT ACAGTTTGGT TTGGCACAGG CCGAGTATGA ATGATCCGGC GCACCGTTGG
TTATACGAAC AGATATTAGC AATAGGCTGC AATTAG
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| Protein sequence | MDLIKLSRIS MKHLITLHVM LDTLSVTASA QRLCLSPSSI SKTLGQLRNS LNDELFYRHG
NKLVATPLAR RLGPSVHQMI NDMNQIMTQE VFDPARYQGR FSLAMRESTF ELLAAKLSAH
VLALAPNIRL DIWSKDSVGF DGLAKGTLDF IILPHDRSQP PSTHSDLVWE TLTNDEMVCL
MSPEHPLVKK GNKEQPFTLD DYLSYGHIGI TDTDLNTPFF EMQLAQQELQ RKVAISVPDF
GGAALMCHHS ELLFTCSRRW AETAFQAKGL QIKPLPFNYG EVVYSLVWHR PSMNDPAHRW
LYEQILAIGC N
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