| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0250 |
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| Symbol | |
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| ID | 5610436 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 282807 |
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| End bp | 284225 |
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| Gene Length | 1419 bp |
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| Protein Length | 472 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640931076 |
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| Product | Sel1 domain-containing protein |
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| Protein accession | YP_001471991 |
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| Protein GI | 157373391 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTTACTG ATGTCGAATT CGTTACTCAG TTTTCTACTG AGCTGGGCCA TGATTACGGG
GTAGCCAAAA GCTATGTCCG GGATGTCCCC ACCCAAGCCT TGCTTCAAAT CCGCAGCTTT
ACTCATAAGC TGACCGAGCT GCTGGCTAAG CCTAAACGAA TAACCTTCGA TAGCCCCAAC
CTATACGACA GGATCGAAAT GCTTAACCGG AAGCGAGTGA TCAACGTGCG TACCACCAGA
GCTTTGCACA AATTGCGAGG TGACGGTAAC CGCGGGGCAC ATCCGGAAAA GTATCACCTG
ACTTCTGAGC AGTTACTCGA GTTAAGTGAA AAGTCGATAG AGAAACTGCT GAGCCTGGTC
GCGTCTCTGT TTACTCAAGT TACCACCAAC CCCCTTCCCG AATATCGCTT CGAAGCGTTC
GACTCTTTTG CCGGGCGGGA TCTCTGTTAT CGAGCCGTGA TGGAGTCAGA CCCTCAGGCG
CAATACTTAG TCGGCATGTC GCTTAAGACT AAAGCCTTGA TGCAGCGAGA GCAGGAGCAG
GCGTTAGCCG AGCCGGAGGA AGAACAAGGA TCCCCCCCGG ATAAGTTTTC TGACAGTACA
TTCAAAAAAG CCGAGTATTG GTTTACTCAA GCCGCCGATA GCAATATGGA TGCGCTCTAT
GAATCGGGCG TGGCCCTTAT TCATGGTTAT AGCGGTAAGG TCGATATTGC AGCCGGTGAA
CAAGTCATTG CGGCCGCAGC TGAGGCGAAT GTGGCTAATG CCATGGCGCT ACTCGGCTAT
TTTCATCTGG TAGGCGGTGA GAGCATTAAA CTTGATTCGG ATAAGGCCCT GCATTATCTT
CAGCTGGCTG CAGATCTTGA ACAATCAGAA GCAATAGCCA ATTTAGGGGT CCTGTTTTAT
CAGCGCGGCG ATCTTGAAAA GGCGAAGCAT TTTATCGCTA AAGCGGCTCA GGCAGGCTTT
CCCCATGCTC AGTATCATCT GGCGTTAATG TTGGCTCGAG GCGAGGGTTG CGATGCCGAT
TCGATTGCCG GTGAGCAGTG GATGGCCGAG GCGGCGGAGC AGGGACAGGT AGATGCTATG
TTGGCCCGCG CACAATCTAT GTTGAATGAC GATAATGCTT TCGGTTGCGA CCTCTCACAG
GCCGAGCTGT ACTTACGGGA GGCGATTAAA TATGGCCACA GTGTACCCGC TATGATTGAA
CTGAGTATCG CGCTTGCCGA TGGTATGTTG GGAAAAATTG ATGTCGTGGG ATCTGCGGCC
CTGCTAAAAC TGGCTCGTGA GCGGAGTAAT CCCCAAGAGC TGGCCGTGAT AGAACCCTTG
TGGGAGTCAC TGTCCCTGCA GGTTGAAAAC GTGTTGTCGA TGACTGATAA CACCGATGAA
GTCGCCTCTC TTCAGCGGGC AAAAGAGCTG CTCTCTTAA
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| Protein sequence | MLTDVEFVTQ FSTELGHDYG VAKSYVRDVP TQALLQIRSF THKLTELLAK PKRITFDSPN
LYDRIEMLNR KRVINVRTTR ALHKLRGDGN RGAHPEKYHL TSEQLLELSE KSIEKLLSLV
ASLFTQVTTN PLPEYRFEAF DSFAGRDLCY RAVMESDPQA QYLVGMSLKT KALMQREQEQ
ALAEPEEEQG SPPDKFSDST FKKAEYWFTQ AADSNMDALY ESGVALIHGY SGKVDIAAGE
QVIAAAAEAN VANAMALLGY FHLVGGESIK LDSDKALHYL QLAADLEQSE AIANLGVLFY
QRGDLEKAKH FIAKAAQAGF PHAQYHLALM LARGEGCDAD SIAGEQWMAE AAEQGQVDAM
LARAQSMLND DNAFGCDLSQ AELYLREAIK YGHSVPAMIE LSIALADGML GKIDVVGSAA
LLKLARERSN PQELAVIEPL WESLSLQVEN VLSMTDNTDE VASLQRAKEL LS
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