| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0206 |
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| Symbol | |
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| ID | 5611486 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 234315 |
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| End bp | 235505 |
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| Gene Length | 1191 bp |
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| Protein Length | 396 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931032 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_001471947 |
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| Protein GI | 157373347 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCTGCTT TTTATCACAG GTGTCGCTAT TTCTTTCTTC CGCTGCTAGT CACAGCTTTT
TCATTAGGCT TGCTTCAATT TACACAAGCT AACTGGCAAA TTTGGCAGGG GAGCATCAAC
CAGCTTCCTT TTTGGCTACT CGTCACAGCA ACCGCCCTTG CACTACAATT TAATCGTAGT
CGTTTAGCCT ATCTCGCTAC ACTGCTATTG CTGTTTTATG CTGACAAACA ACATCATCTC
CTCCCCTCAT CTCTTAGCTC GTACACCGAA GCGAACTTTT TAGGAGGTGC GATGATTATC
ACCTGCTTCT CCTTCTTCAA AGATAGGGGG CTACTCTCTC CCCACAGTCT GGTTAGAGTT
TTTTCAATTT TTCTCTGCTT TGGCATGGCC TACGGCTGGC TATGGGGGAT TGAACATTTT
CAGGCAGAGA TCACTGCTAA GTCACCCTTG AGCCTCTCCT TTCAATTTCA AGCGGCTCTA
CCGCTATACT TATGTGGACT TCTCGTTTTA ACCCGTACCC TATGGCAAGC AAATCTGGTC
AACACCTCGA TACTCATCAC CTTCGTCATA TGGGTGCTGT ATGATTTAAC CCCCGGGCAG
CTTCCACTTT CCGTGCTTCT ATCGGCACTA GCGGTCATCT TCCTGTTTAC TATCTTAATC
GACTCCTACT TTCTCGCTTA CCGCGATGAA CTCACGGGGC TCGCATCGAG ACGAGCACTC
TATAATCTAG TGCTATCTCT GGGGAGAAAG TACAGTGTAG CCATGCTCGA TATCGATCAC
TTTAAGAAGT TTAACGACAC CTACGGTCAC GATGTTGGCG ATCAGGTGTT AAAACTCGTT
GCCGCTAAAA TGGCTCGCGT ATCCGGTGGC GGCAAAGTAT TCAGATACGG CGGTGAAGAG
TTCACCATCG TTTTTCCCCG CAAGGACACG GACTCGGTTA TCGATCACCT CGAAGATGTC
AGAGAGTCCA TCGAGGAGTA TCGAATAGTA TTACGGGACG ATAAACGCAA ACGCAGCACG
AAAGCAAAAC GTAACGCTGC CAACAAATCA AACAAGAAAA CCGTGAGCGT CACCATCTCC
ATCGGGGTTG CCGAGAGGCT GGGAGGCGAG ACGTTCGATC AGACGTTGAA GCAAGCCGAT
GAGGCCCTCT ACAGAGCCAA GAAGAAAGGA CGCAACCAGA TCTGTACCTG A
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| Protein sequence | MSAFYHRCRY FFLPLLVTAF SLGLLQFTQA NWQIWQGSIN QLPFWLLVTA TALALQFNRS
RLAYLATLLL LFYADKQHHL LPSSLSSYTE ANFLGGAMII TCFSFFKDRG LLSPHSLVRV
FSIFLCFGMA YGWLWGIEHF QAEITAKSPL SLSFQFQAAL PLYLCGLLVL TRTLWQANLV
NTSILITFVI WVLYDLTPGQ LPLSVLLSAL AVIFLFTILI DSYFLAYRDE LTGLASRRAL
YNLVLSLGRK YSVAMLDIDH FKKFNDTYGH DVGDQVLKLV AAKMARVSGG GKVFRYGGEE
FTIVFPRKDT DSVIDHLEDV RESIEEYRIV LRDDKRKRST KAKRNAANKS NKKTVSVTIS
IGVAERLGGE TFDQTLKQAD EALYRAKKKG RNQICT
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