| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0155 |
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| Symbol | |
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| ID | 5611135 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 176652 |
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| End bp | 177554 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 640930981 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_001471896 |
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| Protein GI | 157373296 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0668] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGGTTT ACTCGTTTTT ATTGCACCAT TTTTTTAGTG TTAAAGAGGA TTTTGTGGAT
AAACTTAACA TTGCCGTTGA TTTTTTACTA ACGCATAAGT TGTTATTGAC CGTTTTGGTG
ATTGTCTTCA TTTCACTGGT TAAACGTTTC ATCATCTCGA AAATTCGTGG TGATATTCCG
TTTTTGACTG AGGTGCAGCG CAAGTGGATG TCGCGCACTA AAAACGGCAC GTTTATCTTA
ATCATGGTCA TCTTATTTAT GCTTTGGCAG ACGGAGATAA ATAAATTTGC ATTGTCAGTG
ACCGCCATTG CTATCGCAAT TGTGGTGGCA TCAAAAGAGA TTATATTGTG TTTTACAGGC
TCGATTCAGC GTGCGAGTTC ACGCTCATTT GTTATTGGTG ATTGGATTGA GGTGGGTCAA
TTATGTGGTG AGGTCATTGA GCATAATTTA ATGGCGACAG TGATACAGGA AATAGACCTA
CATCACGGGC AATACCATTA CACAGGTAAA ACGGCGACAC TACCTAACAG CATGTTCTTT
ACCTATGCGG TCAAGAATCT TAATTTTATG AAGCGCTATG TCTACCATAA CTTTCATATA
ACCATTGTTG AGTTCGTTAA CTTATATCCT CTCTTTCCTG AACTACGCGA ACAAATTGAA
GCGCATTGTG AAGACTTCCA TGAAGTGGCA ACACGCTACA ATAGTGTTAT TGAAAAACAT
GCGGGTGTTG ACCTACCAGG CTCAGAGCCA CATATCCATA TCAATAGCGG CCCCAATGGC
GAGCAAAATA TTCATATTAT GATTTTTTGC CCCACTGAGC GCGCAGCTCA TCTGGAGCAA
CTCATTCGCG AAGATTTTAT GATTGCTTAC CATGAAGCTT TTGGTAAAGA AGCACTTCAG
TAG
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| Protein sequence | MVVYSFLLHH FFSVKEDFVD KLNIAVDFLL THKLLLTVLV IVFISLVKRF IISKIRGDIP
FLTEVQRKWM SRTKNGTFIL IMVILFMLWQ TEINKFALSV TAIAIAIVVA SKEIILCFTG
SIQRASSRSF VIGDWIEVGQ LCGEVIEHNL MATVIQEIDL HHGQYHYTGK TATLPNSMFF
TYAVKNLNFM KRYVYHNFHI TIVEFVNLYP LFPELREQIE AHCEDFHEVA TRYNSVIEKH
AGVDLPGSEP HIHINSGPNG EQNIHIMIFC PTERAAHLEQ LIREDFMIAY HEAFGKEALQ
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