| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0149 |
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| Symbol | |
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| ID | 5611490 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 168072 |
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| End bp | 168977 |
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| Gene Length | 906 bp |
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| Protein Length | 301 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640930975 |
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| Product | LyrR family transcriptional regulator |
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| Protein accession | YP_001471890 |
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| Protein GI | 157373290 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 60 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTATGG ACGCGGCTCA ACTCTATCGA ATGCTTGTCT TTGCCAATGT TGTCGAACAA
GGTTCGCTCA CCGCGGCAGC CAACGAATTG GGCATCAGCC GTTCTATGGT CAGTCAACAC
CTGAAAAAGC TTGAGCTAAG GTGTGCAACA CAACTAATAC ACCGTACGAC ACGAAAAATG
GCATTAACTG AAGACGGTCA AAGCTTTTAT CACTACTGCG CCGAACTGCT GCAACTTGCC
AAACAAGCCG AAAATTCAAC AAAACCTCAG GATAGAGAGC TACAGGGCAG CATTAAAATT
TCAGCCCCCG TTTGTCTTGG GGAACAAAAT CTCATTCAAC ACATTGGCGA TTTTAATAAA
CGCTATCCCA AGATTCGAAT CACGCTACGA CTCGAAGATA GAAGGCTTAA CCTGCTGGAA
AATAACATCG ATATCGCGAT ACAGACAGAG CAGGCTACAG AGTTCACCTC TATCAGACTC
GGTCAGTTCG ATGAATACCT GATTGCGAGT CCGGAATATG TTGAACAACA TGGTTCACCG
CTCCATCCGG ACATGCTGGC AAAACACCAA TGGATTATGC AGTCATCTAA CTACCTTCCT
AAGAGTTGTC TGCTGCAAAA CAGCTTCGGA GACAAGTTCA AGATTAAGAT CAATCCATTT
ATCAGTTGTA ACAGCAACCA TGGCATCGTC AAACTTGCTA AGCAGGGATT AGGAATAGCG
ATACTCCCCA GCTATTTAGT ACAGGCTCAG ATAGAGAGTG GTAAATTCGT TCATATCCTT
CCCGACTATC ACCTCAGAGA AGGAGTGATA TATGCAGTTC ATCCGTTTGA CGATGTTACG
CCACCGAGAG TCAGGGCATT CCTCAACTTC ATAGAAAAAC GTCTGATCCC TGACAACCAA
AGGTAA
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| Protein sequence | MLMDAAQLYR MLVFANVVEQ GSLTAAANEL GISRSMVSQH LKKLELRCAT QLIHRTTRKM
ALTEDGQSFY HYCAELLQLA KQAENSTKPQ DRELQGSIKI SAPVCLGEQN LIQHIGDFNK
RYPKIRITLR LEDRRLNLLE NNIDIAIQTE QATEFTSIRL GQFDEYLIAS PEYVEQHGSP
LHPDMLAKHQ WIMQSSNYLP KSCLLQNSFG DKFKIKINPF ISCNSNHGIV KLAKQGLGIA
ILPSYLVQAQ IESGKFVHIL PDYHLREGVI YAVHPFDDVT PPRVRAFLNF IEKRLIPDNQ
R
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