| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0131 |
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| Symbol | |
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| ID | 5612277 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 146463 |
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| End bp | 148496 |
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| Gene Length | 2034 bp |
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| Protein Length | 677 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640930957 |
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| Product | TonB-dependent receptor, plug |
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| Protein accession | YP_001471872 |
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| Protein GI | 157373272 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.184061 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGTAC AACAAAAAAT AATAAAAATG TCGGCAATCG CGCTTGCCAT CGGTAGTAGT
GGAGCCGTAT TTGCGGACGA CATAGATAGA GACCCAATCC TCAATGTAAA CGAAGTCATC
GTTGTTCATG GCGAGAGACC GACCGCGACA GAAGTGGCTA CGACTCATTG GAGTATCGAT
GAGGATGAGA TAAAAGCGCT GGGGGCTCAA AGCTTAGAAC AAGTGCTTAA AAATGTGCCT
GGCGTATATG TAAGAACCGG CGGACAGGGT ACACCAAGGG TAGATATTCG TGGGTTTAAG
ACACGACACG TTACCTTGCT CATTAATGGT GTGCCGGCAA ATGGTGCCGA AGATGGCCAG
TTTGATCCAA GTGTGATCCC AACCAGTCAG ATCGCTTCTG TCGAAGTTTC AGTAGGGCCG
ACATCGGTTC TTTATGGCCC CGGCGGAGCC GGTGGTGTGA TTAATATCAT CACCAAGCAG
GGAGATGATG CCTCTACTTT GTCGGGGCGA TTAGAGGCGT CCGGCGAAGA TACCTTCAAT
GGTGACATTA GCGCTGCGGG GTCAGGTGAT AATTGGCAAG GTTTGGTCAG TGTCAGTCAT
CAACAAACGA ATGGTTTCCC ACTGTCAGGT GATTATCCAC ATAACGATGT TCAGCTTGAT
GATGTCAGGG CTAACTCTGA TAAAGAGATC GATAATATTT ATGCTCAGGG GAGCTATTGG
TTATCAGACA ATACCCAAGT AACTGCCAAT ATGAGCCTGC GTTCGGGCCA GTGGGGCAAG
CCTTCACGAG ATGGTAGCGG TAGCGGAACC GTTAAGTTTG AGCGGGCCGA TGACTATGAT
GCAAAAACCT TCCAGTTAGG CATGGCACAT AAATTCAGTG AGATGTTCAC CCTTAGAGGT
TTCGGTTATC ACAATCAGAG TGATGTGCTG GAGACACAAT ATACCGATTC CAGCTATACC
AAGGTGAAAC AGAGTCAGGA CGGACGCTCA AAGGTACAGG GCGGAAATCT GCAGTTTATC
ACCAATTTCG GTGATGTGGG TTTGCTGACG AGTTCTCTTA TCGCTGAAAA TCAGAGCTGG
GAGTCCACAA CATCCAAGCC ATCGACAGGT GACAAGTCGA GTCAGAAGCA GAGTCGGGTA
CTCGATGGCT ATAGCGGCGG AAGCGGTGGT GGAAACGGCG GTGGAAGCAG CAACTTCGAT
GACTCGGCGT GGCTCTATAC CTTAGCCGCC GAATATCAAT ATCAGGATGA TGGCTATTAT
GGTTTCACCA TAGGTGGTGC TCTTCATGAT CAAGACCGTG TCAAAGAGTC TGAGAATGAT
TACTCAGGGC AGCTGTCCGG ATTCTGGCAA GCATTTGAAC AGACACGTTT CAATGCGGGA
ATCGCAAGAA AAGTTCGCTT CCCTTCGATG AAGAACCTGT ACTCACAATC TTCAGGAAAT
GCCGATTTAG TTGCAGAAAC ATCTAAACAT TTTGAACTCG GTGTTGAACA AGAGCTGGGA
GCATCGACGG CGCTATCCGT TGCGGGCTAC TACACCGATG CCGAGAACTA TATTGCCAAG
GATATGTCAG GTGTCTATCA AAATATGGGG CGCTATCAGT TCAAAGGGGT CGATGTGTCT
CTGAATAACC AGTTCATTGA CGATCTGTCA TTAACCTTTG TCTATAGCTT TTTGGACACC
GAAGACAAAG ATGCTTTCGA TGGCATGGGG ACTTTAGAGT ATCGCCCAAG GCATCAGCTT
CGTTTTCAGG CAGATTATGA GCTTCCTTTT GCGATGCGAA TCAACATGAA TATTGAACGG
ATCATGGGAC AGGTCTACTA CGAACAGGAG AAGGTTAACG GTAATAAAGT TTGGACCGAG
CAGTCATTAA AAGATTACAC CTTGTTGGAT TTGAACTTAG TTCAACCTGT ATTGGATGAC
AAGCTGGAGC TCTACATCAG GGCGACAAAC TTGTTAGATG AAAACTATTA CCAAAGCGAT
GCCATTCCTC AGGCTGGACG ACAAGTCTTT GTCGGCATTA GCTGGCAGAT ATAG
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| Protein sequence | MKVQQKIIKM SAIALAIGSS GAVFADDIDR DPILNVNEVI VVHGERPTAT EVATTHWSID
EDEIKALGAQ SLEQVLKNVP GVYVRTGGQG TPRVDIRGFK TRHVTLLING VPANGAEDGQ
FDPSVIPTSQ IASVEVSVGP TSVLYGPGGA GGVINIITKQ GDDASTLSGR LEASGEDTFN
GDISAAGSGD NWQGLVSVSH QQTNGFPLSG DYPHNDVQLD DVRANSDKEI DNIYAQGSYW
LSDNTQVTAN MSLRSGQWGK PSRDGSGSGT VKFERADDYD AKTFQLGMAH KFSEMFTLRG
FGYHNQSDVL ETQYTDSSYT KVKQSQDGRS KVQGGNLQFI TNFGDVGLLT SSLIAENQSW
ESTTSKPSTG DKSSQKQSRV LDGYSGGSGG GNGGGSSNFD DSAWLYTLAA EYQYQDDGYY
GFTIGGALHD QDRVKESEND YSGQLSGFWQ AFEQTRFNAG IARKVRFPSM KNLYSQSSGN
ADLVAETSKH FELGVEQELG ASTALSVAGY YTDAENYIAK DMSGVYQNMG RYQFKGVDVS
LNNQFIDDLS LTFVYSFLDT EDKDAFDGMG TLEYRPRHQL RFQADYELPF AMRINMNIER
IMGQVYYEQE KVNGNKVWTE QSLKDYTLLD LNLVQPVLDD KLELYIRATN LLDENYYQSD
AIPQAGRQVF VGISWQI
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