| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0126 |
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| Symbol | |
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| ID | 5612311 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 139868 |
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| End bp | 141985 |
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| Gene Length | 2118 bp |
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| Protein Length | 705 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640930952 |
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| Product | integral membrane sensor signal transduction histidine kinase |
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| Protein accession | YP_001471867 |
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| Protein GI | 157373267 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCCTTTT TTCCTCGTAT TTTTGGTATC AATTGGCAGC AGATGCAAGC TAAGGTTCGT
TATCGAATTT TAATCCTTAC CTTGCTGCCG ATCCTGCTTA CCTTAGTTAG CTTAGTATTT
ATTACCATCT ATTGGAATAT CAGCTATACG GGTAAGCAGT TGTTTATGAA GGTTAAGGCT
GACCTTACTG TCGCGAACAA CACGCTTATC TCTGTTCAGA AGAGTCAGGA AAAGCAGCTG
GAACTCGTAA TGGAATCATG GGAATTCCAG AATGATTTTC GTCTGTTCGA TGGCAATAAA
AATAGCTATC GAAAGCAGAT CGATCATTTG CTCGATTCCA AAAAACAGCT GTTAAATTTA
GATTTCTTGC GTCTGGTTAG CGTGTCAGAG GCCGCTGCCG ATCCAGACCT TCGCGTCATG
CTTCAGAAAG TAAAAGGTGA TTCTGCATAT TCAGGTTTAA TGGTACTGGA ACCTAAGCGC
CTGGCATTAA TTGATCCTGA GATGGTGAAG ACGGCAAGTA TTCCATTAGT TGAAACGCCC
AGATCACAAA AACCGACTAA GAAAGTCGAA GACAGGGGCT TACTCAGTCG AAGTTTGTTG
CCCGTTCCCG ATGCCGAAGG CAATGTTGCC TGGTACTTAG ATGGTGGGAT CTTGTTTAAT
CGGGATATTC GTATCGTCGA TCACATCAGA GATCTGGTTT ACGACAAGGG GACACTGCCG
GAACGATCTA TCGGCACAGT GACTATCTTT CTCGACAATA CGCGTATCAG TACCAATGTT
CCCCTACATT TTTTCCCACA AGGTGGGGAA GTCGAGGGGC GTGCATTAGG CAGCTTAGTA
TCTGAAGAGG TTAAGCAAAA AGTTTTTTCT CAGGGAATGC TCTGGGTCGA CAGAGCTTTC
GTGTTCAATG ATTGGTTTAT CTCTGCTTAT GCACCACTCG AGGATGTTCA GGGTAAGCGA
ATAGGGATGA TTTATACCGG CTTCTCAGAA TCGCCATTTA TTCATAATTA CCTACTTAAT
ATTATAGAGC TGGGCACCAT CTTGATGTTG GTTTTACTGG TGTCTGGATT GCTCGTCTAT
CGCGGTGCTT ATAGCTTACT TCAGCCAATT GAGCGTATTC ATCACGTGGT TAAAGCGGTG
CAATCAGGAC GAAACCTGCG CATCGGATCT TTGGGGCTTG AGCGAGATAA TGAATTATCA
AATTTAGCCG AGCAATTTGA CCGAATGCTG GATCTGCTGC AGCGCCGAAA TTCGCAAATC
CAGGCTGCTG CCGAGCAGTT AGAGGTGAAA GTTGAAGAGC GGACACGAAG CCTGCAGGAG
AAAACAGAGG AACTTCAAAA CAACGTGGCT CTGCTTAATG AGACCAGACA ACAACTGGTC
ACCAACGAGA AGCTTACCGC ACTGGGTGAG CTGACCGCAG GTATTGCCCA TGAGATTAAT
AATCCGACCG CGGTGATCTT AGGCAATATG GAGTTGATGA AATATGAGCT AGGCGATAGG
GCGGAGGATG TTGAGGAGGA GATCGATCTC GTGATCCAAC AGGTGGGACG GATCAGTACC
ATTATCCGTA GCCTGCTGCA GTATAGTCGC CCTGGTGAGT TCAATGCTCC ACTTGAGATG
CATCAACTCA CTCCGATTAT CGAAGAGATG TTGGTATTGG TGCGCCACTC GATTCAAGAG
CAGAAGGTGA TATTGAATCA GGAGTTGAAC GCCAGTTATC CGATAGAGGT GAACCGTCCT
CAGTTATTGC AAGTGTTGAT TAATCTCGTG GTTAATGCGG CCCATGCAAT GGATGAAGAG
GGAAGGATCT GGATCCGAAC CTATGATTGG GTCCAAAGAG GTGAACCTAT CGGGGTTAAG
ATCGAAATTG AAGATGAAGG TAAAGGGATC CCACAAGAGC AGCTGAGTCG TATCTTCGAT
CCATTCTATA CCACCAGAGC CGACGGTACG GGTCTGGGGC TATCTTTGAG TTACGGAATT
ATTAAGCGTA TTGGTGGAAC GATAGAGGTC AGCTCTACGG TGGGCAAGGG AACGCTATTT
ACCATAGGTT TATATCATAA AGCTAAGGAG GAGCAGGTAG ATACCCCTTA TGAGGGGCTG
CACTTTAATG GTCATTGA
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| Protein sequence | MSFFPRIFGI NWQQMQAKVR YRILILTLLP ILLTLVSLVF ITIYWNISYT GKQLFMKVKA
DLTVANNTLI SVQKSQEKQL ELVMESWEFQ NDFRLFDGNK NSYRKQIDHL LDSKKQLLNL
DFLRLVSVSE AAADPDLRVM LQKVKGDSAY SGLMVLEPKR LALIDPEMVK TASIPLVETP
RSQKPTKKVE DRGLLSRSLL PVPDAEGNVA WYLDGGILFN RDIRIVDHIR DLVYDKGTLP
ERSIGTVTIF LDNTRISTNV PLHFFPQGGE VEGRALGSLV SEEVKQKVFS QGMLWVDRAF
VFNDWFISAY APLEDVQGKR IGMIYTGFSE SPFIHNYLLN IIELGTILML VLLVSGLLVY
RGAYSLLQPI ERIHHVVKAV QSGRNLRIGS LGLERDNELS NLAEQFDRML DLLQRRNSQI
QAAAEQLEVK VEERTRSLQE KTEELQNNVA LLNETRQQLV TNEKLTALGE LTAGIAHEIN
NPTAVILGNM ELMKYELGDR AEDVEEEIDL VIQQVGRIST IIRSLLQYSR PGEFNAPLEM
HQLTPIIEEM LVLVRHSIQE QKVILNQELN ASYPIEVNRP QLLQVLINLV VNAAHAMDEE
GRIWIRTYDW VQRGEPIGVK IEIEDEGKGI PQEQLSRIFD PFYTTRADGT GLGLSLSYGI
IKRIGGTIEV SSTVGKGTLF TIGLYHKAKE EQVDTPYEGL HFNGH
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