Gene CCC13826_2023 details

Gene Information

• Locus tag: CCC13826_2023
• Symbol: ligA
• ID: 5597617
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter concisus 13826
• Kingdom: Bacteria
• Replicon accession: NC_009802
• Strand: -
• Start bp: 1298591
• End bp: 1300534
• Gene Length: 1944 bp
• Protein Length: 647 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 640929864
• Product: NAD-dependent DNA ligase LigA
• Protein accession: YP_001467146
• Protein GI: 157164612
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.000845936
• Plasmid hitchhiking: No
• Plasmid clonability: unclonable

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAAAAC AAGAGTATGA AAAAGCGGTA GATACGCTAA ATGCGTGGGC AAAGGCCTAC 
TACGACGAGG ACGAGCCACT TGCAAGCGAC GAGGAGTATG ACGCGCTATA TCACGCGGTT 
TTGGCTTTCG AGCAGGCAAA TCCCAGTGAA ATTTCGCTAT TTTCGCCGAC TAAGCGAGTG 
GGCGGAGGCG TGAAAGAGGG CTTTAGCAAG GCAAGCCACA TAAAGCGCAT GTGGAGCATG 
GAGGATATCT TTAGTCTTGG CGAGCTTGAT GCATGGCTAA AGCGCGGAGA GAAGGAGAAT 
TTGACCTTTG TAGCTGAGCC AAAATTTGAC GGAGCGAGCC TAAATTTACT CTACGAAAAT 
GGCGTTTTAG TTAGGGCGAT AACCAGAGGA GACGGCGTTA CAGGCGAGGA CGTGACGCAA 
AATGCAAGGA CCATTAGCTC GGTGCCAAAG AGCATTAGCT ACAAAGGGCT CATTGAAATT 
CGTGGCGAAG TCGTCATAAG AAAAGATGAC TTTGAGCTAT TAAATATGGA GCGCGCAAAA 
GAGGGCGAGG CGCCACTTTC AAACCCTAGA AACGCAGCCG CAGGAAGCCT TAGACAGCTT 
GATAGCGCAG TCACTGCAAA AAGAAAGCTA CTTTTTATAC CCTGGGGCGT GGGCGAGCAG 
AGCCTTGGGC TAAAAGATCA CAGCGAGGTG ATGAAATTTG TGCGAGATCT TGGCTTTGAG 
AGGGATGATT TTTTCAAAAT TTTAAAAAAA GATGAGCTTG AGGCTGCGTA TAACGAGCTC 
TTGGCAAATC GCGACTCAAA AAGCGTAATG ATGGATGGCA TGGTGATACG TGTAAATGAC 
CTTGCGCGCT GTGAGCAGCT AGGATATACG GTCAAATTTC CAAAATTTAT GGTGGCGTTT 
AAATTTCCAG CCATTGAGAA GGTCACAAGG CTAAAAGACG TGGCACTTCA GGTCGGTAGA 
AGTGGCGTGG TGACGCCTGT TGGCGTGCTT GATGAGGTAA ATATAGATGG CGCAAATGTA 
AAATCCGCCA CTCTTCATAA CTTTGATGAG ATCGAGCGCC TTGGCGTCAT GAAAAACGAC 
TACATCGGCA TCATCCGCTC AGGAGATGTG ATACCAAAGA TCACAAAGGT TTTTAAAGAT 
AGACGAGATG GCAGCGAGCA AGCGATAGAA AGGCCTAAAT TTTGCCCAGT TTGCGGTTCG 
CACCTGCTTG ATGAAGGTGT CTTTGTAAAG TGTCAAAATT TAAGCTGCAG GGCAAGAGTG 
GTGGGCTCGA TAATCCACTA CGCATCGAAA AAATGCCTAA ATATCGACGG CCTTGGCGAT 
GCGATAGTAA ATTTGCTATT TGACAAGGGG CTTATTGCTT GCATAAAAGA CATTTACGGC 
CTTAAATTTG ATGATCTTAT GTCGCTTGAG GGCTTTAAAG AGAAAAAGGT AAATAACCTT 
TTAAATGCCA TTGAGGCTAG CAAAGGTGCG GAGCTATCGC GCTTTATCAC GGGCCTTGGC 
TGCGAGCATA TCGGCGAGGT GGCGGCAAAG AAGCTAGCAA GTAGCTTTGG ACTGGACTGG 
CTTGATGCTA GCTTTGAGGA GCTAACCGCA CTTGAGGGCT TTGGCGTGGA GATGGCAAAT 
AGTTTAATCG ACTTTGCTGA GGTAAATAGG GACGAAATTT TAGCTTTAAG CCAGATCGTG 
CAGCCAAGCG TGACGCAGGT GCAAAGCATC TCAAATGCGC TAAGTGGCAA GACGGTCGTT 
ATAACTGGCA CGCTAAGTCG CCCAAGAGAT GAGATAAAGG CGGAGCTTGA GAGTTTTGGT 
GCAAAGGTTT CTGGCTCAGT CTCTAAAAAA ACGGACTTCG TCCTAGCTGG CGAAGAGGCT 
GGCAGCAAGC TAGATAAGGC AAATGAGCTA GGCGTGCTGG TGATTGATGA GAGCGAATAT 
GAGAGGCTAA AACTTGAGGT TTGA 

 

Protein sequence

MTKQEYEKAV DTLNAWAKAY YDEDEPLASD EEYDALYHAV LAFEQANPSE ISLFSPTKRV 
GGGVKEGFSK ASHIKRMWSM EDIFSLGELD AWLKRGEKEN LTFVAEPKFD GASLNLLYEN 
GVLVRAITRG DGVTGEDVTQ NARTISSVPK SISYKGLIEI RGEVVIRKDD FELLNMERAK 
EGEAPLSNPR NAAAGSLRQL DSAVTAKRKL LFIPWGVGEQ SLGLKDHSEV MKFVRDLGFE 
RDDFFKILKK DELEAAYNEL LANRDSKSVM MDGMVIRVND LARCEQLGYT VKFPKFMVAF 
KFPAIEKVTR LKDVALQVGR SGVVTPVGVL DEVNIDGANV KSATLHNFDE IERLGVMKND 
YIGIIRSGDV IPKITKVFKD RRDGSEQAIE RPKFCPVCGS HLLDEGVFVK CQNLSCRARV 
VGSIIHYASK KCLNIDGLGD AIVNLLFDKG LIACIKDIYG LKFDDLMSLE GFKEKKVNNL 
LNAIEASKGA ELSRFITGLG CEHIGEVAAK KLASSFGLDW LDASFEELTA LEGFGVEMAN 
SLIDFAEVNR DEILALSQIV QPSVTQVQSI SNALSGKTVV ITGTLSRPRD EIKAELESFG 
AKVSGSVSKK TDFVLAGEEA GSKLDKANEL GVLVIDESEY ERLKLEV