| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CCC13826_1625 |
|---|
| Symbol | trmE |
|---|
| ID | 5595852 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter concisus 13826 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009802 |
|---|
| Strand | + |
|---|
| Start bp | 785723 |
|---|
| End bp | 787048 |
|---|
| Gene Length | 1326 bp |
|---|
| Protein Length | 441 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640929353 |
|---|
| Product | tRNA modification GTPase TrmE |
|---|
| Protein accession | YP_001466649 |
|---|
| Protein GI | 157164829 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0486] Predicted GTPase |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.834042 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAAA CTATCGCAGC CCTTGCCACA GCTTATGGCA TCGGCTCAGT TTCTATCGTA
AGGCTTAGCG GCAAGGACGC CCTAGCCACC TCTTTAAAAC TTCTTAAACT TTCAAATTTA
GAGCCAAGAT ACGCAAAACT AGCCAAAATT TACTCCATTG ATGATGAAAT TTTAGACGAG
GGCATAGTTA TATATTTTAA AGCCCCAGCA AGCTTTACTG GTGAGGATAT CGTCGAGTTT
CAAACTCATG GCGGCGTTAT GGTGAGCGAG AGAATTTTAA ATGAGCTAAT AAGAGCTGGT
GCTAGGCTTG CTATGCCAGG TGAGTTTAGT AAGCGAGCAT TTTTAAATGG CAAGATGGAT
CTAGCCAAGG CCGAGGCGAT GCAAGGGCTC ATCACTTCAA AAAGTGAGAT CGCTGCTAAA
ATTTTGACCC GCCAAATGCA AGGTGATCTT AGTAAATTTG TAGGCGAGAT CAGGGGTGAA
GTGGTCAAAA CTCTTGCTTT TGTCGAGACT ATGATTGACT ATGCTGATGA TGATCTGCCT
GCAAATTTGC TAGAGCAGAC TAAGCTGATG CTTTTAAAAA ATAGCGAGAA ACTAGAGCGC
ATAGCAACTC TTAGCGAGCA AAGAAGAGGG CTCATAGATG GCTTTAAGAT AGCTATCGTT
GGTAAGCCAA ATGTTGGCAA AAGCTCCATT TTAAACTCAT TTTTGGCTTA TGAGCGCGCG
ATCGTCAGCG ACGAGGCTGG CACGACTAGA GATAGGATAG AAGAAAATTT CAAGATCGGC
TCACATCTAG TTCGCATTAT AGACACCGCG GGCATCAGAA AAGATGCTGG AAAGATCGAG
CAAATCGGCA TAAACTACTC AATCTCAGCC ATAAACGAGG CCGACATCAT CCTAGCTGTA
TTTGACGGCT CTTGCCCAAG CGACGAGCAA GATAAGGAGA TAATTAGGCT CATTTCTAAC
TCAAATAAAA AAGCCTTTTT TATCCTAAAT AAAAGCGATC TGGCGTTTAA ATTTGACATA
GAGTTAGATG GCGCTATCAA AATTTCAGCA AAAAATGATT CGAGCGTAGT TTTAAAAGAG
CTTGAGGGTT ATCTCAAGAC GCAAGACACC GACGAGATCA TGCTAAGCTC AAACCGCCAA
ATTTTAAGCT GCAAAGAGGC GAGCGAGGCT TTAAAAAGAG CATTTTTAAG ACTAAATGAA
GAGGAGCTAG AAATTTTTGC TTATGAGCTA AATAGTGCGA TAAAGGCACT TGCAAGTATC
ACAAAGCCAT TTGAGAGAAG TGAAATTTTA GACGAGATGT TTAGCCATTT TTGTTTAGGA
AAATGA
|
|---|
| Protein sequence | MSETIAALAT AYGIGSVSIV RLSGKDALAT SLKLLKLSNL EPRYAKLAKI YSIDDEILDE
GIVIYFKAPA SFTGEDIVEF QTHGGVMVSE RILNELIRAG ARLAMPGEFS KRAFLNGKMD
LAKAEAMQGL ITSKSEIAAK ILTRQMQGDL SKFVGEIRGE VVKTLAFVET MIDYADDDLP
ANLLEQTKLM LLKNSEKLER IATLSEQRRG LIDGFKIAIV GKPNVGKSSI LNSFLAYERA
IVSDEAGTTR DRIEENFKIG SHLVRIIDTA GIRKDAGKIE QIGINYSISA INEADIILAV
FDGSCPSDEQ DKEIIRLISN SNKKAFFILN KSDLAFKFDI ELDGAIKISA KNDSSVVLKE
LEGYLKTQDT DEIMLSSNRQ ILSCKEASEA LKRAFLRLNE EELEIFAYEL NSAIKALASI
TKPFERSEIL DEMFSHFCLG K
|
|---|
| |