Gene CCC13826_1431 details

Gene Information

• Locus tag: CCC13826_1431
• Symbol: rimM
• ID: 5597088
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter concisus 13826
• Kingdom: Bacteria
• Replicon accession: NC_009802
• Strand: -
• Start bp: 1150512
• End bp: 1151042
• Gene Length: 531 bp
• Protein Length: 176 aa
• Translation table: 11
• GC content: 32%
• IMG OID: 640929704
• Product: 16S rRNA processing protein RimM
• Protein accession: YP_001466986
• Protein GI: 157164206
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.0566865
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAATAGTG ATATTGTTGA AGTCGCTACC ATCGGGAGAT GTGTTGGTTT AAAAGGCTAC 
TTAAAGCTTC ACAACAAGAG CGACTTCCCA GAGCAATTTA AAAAAGGCGC AACCTTTTTT 
GATAAAAACG ATGATCAGCT CATCATAAAA GATTATAACA GACAAAAAGA GCTAGTTTTG 
TTTGAAAAAT TTGATGACTT AGACCTTGCT AAAACACTCG TAAACAAAAC TATTTATACT 
ACAAAAGAGC TCACTAGAAA AAACTGCAAA CTAAAAAAAG ATGAATTTTT TCAGTTTGAT 
ATTATTGGCT TAAAAGTTGT AGAAAATGGC GAAATTTTAG GTATCGTAGA AGATATTCAA 
GATAATTTTG CAAACTCACT TTTATACATA AAAACTGATG AAGTGCTTAT TGCGGCTGGC 
AAACCAAAGA ATTTCTACAT TCCATATTTG GAGCGTTTTA TCGAAAGCGT AAATTTGGAT 
AGTGGAGAGA TTTTAGTAAA AGGTGCTAGA GATATCTTAG AAAATTCATG A 

 

Protein sequence

MNSDIVEVAT IGRCVGLKGY LKLHNKSDFP EQFKKGATFF DKNDDQLIIK DYNRQKELVL 
FEKFDDLDLA KTLVNKTIYT TKELTRKNCK LKKDEFFQFD IIGLKVVENG EILGIVEDIQ 
DNFANSLLYI KTDEVLIAAG KPKNFYIPYL ERFIESVNLD SGEILVKGAR DILENS