| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CCC13826_0078 |
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| Symbol | mfd |
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| ID | 5596531 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Campylobacter concisus 13826 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009802 |
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| Strand | - |
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| Start bp | 1197902 |
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| End bp | 1200847 |
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| Gene Length | 2946 bp |
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| Protein Length | 981 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640929761 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001467043 |
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| Protein GI | 157165294 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAGCAA AGGTCTATGA GTATCTTTTA ACACACGCCC CACAAATTCT CATCTGCGAA
GATGACAAAG AGGCGGCACT CTGCGCTGAT GCGGCCAGTT TTGCTGGCTT TAGCGCCTTT
AAACTACCTG ATTTTAGAGC TAAAAAGGGC GATGACCTAA GAAGCTTTAA CGAAGAGCTC
TTTGAAATTT CATCCGTTCT TAGCAAATAC TATAAATTTG ATGGCAAAAA GATCATTGTA
AGCCCATTTA GCACGCTTTT AAACCCACTT CCAACGCAAA AAAACCTAGA AAGCTCAACA
ATCAAGCTAA AAGATAATCT AAATTTAAAC GAATTTGCTG ACTTGCTCAT ACGCTTTGGC
TACGAGTGCG TCGATATCGT TGAGAGCGTT GGTGAATTTA GCATACGCGG CGAAGTTGTG
GACATTTACG GCGTAAATAT GGACGATCCT GTTAGAATTT TGCTCTTTGG CGATGAGGTG
GAGAGCATTA GAAACTACAA CACCGCCACG CAAATTAGCA ACAAAAATGA GCTAAGTGAG
GCTGAGATCG TGCCTTTTAT CGCAAATCTT AGCAAAGACG AGTTTGAAAA AGTTAGCCAA
AAGATCGAGG ATATGCAAAG CGATGCTTTG GTGAGCGATC TAAATTCTCT TGGATTTTGG
GCGATAGATA GCTTTAGCGA CTACTTAAAA GAATTTGACT CAAAGCTTGT TAAGAAGATC
GATTTTGAAA TTTATGACGC ACCTGAAGAG AAATTTAAGG GCATTGAAAT TTTGCCTGAG
CCAAAGGTCT ATAAAGACCT AGAAGTTACT TTAAATTTTG ACTTTTTTGA GCTAAATAAG
AGCAAAAGCA TAACCGTTCT TTCAAGAAAT GAGGGGCTTT TTAAGGGCTA TGAGCTTGAT
GGCTTTGCCA ACGTAAAGCT TGAGATTTCG CCCCTTGTAG TAAATTTAAC CTCAAGCGAC
AAGATCGTAG TATCACTTAA TAAATTTGAG AAAAAAAGGC GAGTTAAACG CTCAAGCCTC
GTGGTAGATG AGCTAAAAGT AAATGACTAT GTCGTGCATG AAGATTATGG CATAGGCAGG
TTTTTAGGCC TTGAAAAGAT CAAGGTTTTG GGTGCTACGA AAGAATTTGT AGTAATTGCC
TACCAAAATG ATGACAAGCT TCTTTTGCCA GTTGAACATC TAAATTTAAT AGATCGTTAT
ATCGCGCAAA ATGGCTCTAT GGCGGTGCTT GATCGCTTAG GCAAGGCAAA TTTTGCCAAG
ATAAAAGAGA AGGTTAGAGA AAAACTCTTT GCGATCGCTT CAAAGATCGT AGCGATGGCG
GCAAAAAGAG AGCTAATCGC AGGCAAAATT TTACAAAAAG AGGATATCTC TTATCTAAAT
TTCGTCCAAG ACGCTGGCTT TTCATATACG AGCGACCAGC AAAAAGCGGT AAATGATATA
AAAGATGAGC TAAAAAGCGG CAAGGTGATG GATAGGCTGC TTAGCGGAGA TGTTGGCTTT
GGCAAGACTG AAGTTGCGAT GAATGCCATA TTTACCTGCA TAAAATCAGG CTTTAGCGCG
TTTTTCTTTG TGCCAACGAC GCTTCTTAGC TCGCAGCACT ACAAGACGTT AAGCCAGAGA
TTTAGCAAAT TTGGCATAAA GGTCTTTAGG CTGGATCGCT TCTCAAGTGC CAAAGAGAAA
TCAAACCTGC AAAAAGCGCT AAAAGAAAAT GAGCCCATAG TTTGCGTGGG TACGCATGCG
CTTCTTAGCG TAAAGGCTGA AAATTTAGGG CTTATCGTCG TTGATGAAGA GCATAAATTT
GGCGTCAAGC AAAAAGAGCA GCTAAAAGAA ATTTCTCAGC ACTCACACAT CCTAAGTATG
AGCGCCACGC CGATACCAAG AAGCCTAAAT ATGGCGCTTA GCAAGATAAA AACATATAGC
ATTTTAGCCA CTCCGCCAAG CTCAAGGCTG GATGTGAGAA CAAGCGTGAG AGAGTGGGAC
GAAAAGGTCA TCAAAGAGGC GATTATGCGT GAGCTAAGAC GCGGCGGGCA GACCTTTTAC
ATCCACAACC ACATCGCAGA CATCGAGCAG ACGGCAAATG AGCTAAGAAA AATTTTGCCA
AAGCTTAGAA TTTTGATACT TCACTCAAAG ATAAATGCAA AAGTCGCTGA AGATGAGATG
ATGAAATTTG AGCGGGGCGA GTATGACCTA CTACTTTGCA CCAGCATCGT TGAAAGCGGC
ATCCACCTGC CAAATGCAAA CACCATAATC GTAGAAAATG CTAATAAATT TGGCATGGCT
GACCTGCACC AGCTGCGCGG TCGCGTGGGT AGAAGCGATA AGCAGGCCTA CTGCTACTTT
TTAGTAGAGG ATAAAGATGC CATTAGCAAG GACGCTCTAA AACGACTTGT GGCACTCGAG
GGCAACTCAT TTTTGGGCGC TGGCTCGGTG CTAGCCTATC ACGACCTTGA GATAAGGGGC
GGTGGTAACA TCATCGGCGA GGCGCAAAGC GGCCACATCG AGGCTATCGG CTACTCGCTA
TATCTAAAGA TGCTAGAAGA TGAGATAAAT AAGCTTCTTA ATCAAGACTC CGCAAAGCTT
GATAAGATCG ATCTAAAGCT TGGTGTGAGC GCCTTTTTAA ATCAAGAATT TATAAGAGAA
GATAGGCTAA GGCTTGAAAT TTATAGACGC CTTAGCAAGT GCAAAGAGGT GAGTGAAGTC
TATGAGATAC AAAGCGAGCT TGAGGATAGA TTTGGCAAGA TAGATACATT TACAAAGCAG
TTTTTAGACC TTATCATCAT CAAAATTTTA GCTCTAAAAG CTGGCATAAA GACGATCTCA
AACAGCGAGC AAAACATACT AATAACAAAA AATGACGACG AGAAGATCAG GCTAAAGTCA
CGCAGCAAGG ACGACGACGA TGTTTTGGCT GAAATTTTGG TCTATCTAAG AAAGGATAAG
AGATGA
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| Protein sequence | MQAKVYEYLL THAPQILICE DDKEAALCAD AASFAGFSAF KLPDFRAKKG DDLRSFNEEL
FEISSVLSKY YKFDGKKIIV SPFSTLLNPL PTQKNLESST IKLKDNLNLN EFADLLIRFG
YECVDIVESV GEFSIRGEVV DIYGVNMDDP VRILLFGDEV ESIRNYNTAT QISNKNELSE
AEIVPFIANL SKDEFEKVSQ KIEDMQSDAL VSDLNSLGFW AIDSFSDYLK EFDSKLVKKI
DFEIYDAPEE KFKGIEILPE PKVYKDLEVT LNFDFFELNK SKSITVLSRN EGLFKGYELD
GFANVKLEIS PLVVNLTSSD KIVVSLNKFE KKRRVKRSSL VVDELKVNDY VVHEDYGIGR
FLGLEKIKVL GATKEFVVIA YQNDDKLLLP VEHLNLIDRY IAQNGSMAVL DRLGKANFAK
IKEKVREKLF AIASKIVAMA AKRELIAGKI LQKEDISYLN FVQDAGFSYT SDQQKAVNDI
KDELKSGKVM DRLLSGDVGF GKTEVAMNAI FTCIKSGFSA FFFVPTTLLS SQHYKTLSQR
FSKFGIKVFR LDRFSSAKEK SNLQKALKEN EPIVCVGTHA LLSVKAENLG LIVVDEEHKF
GVKQKEQLKE ISQHSHILSM SATPIPRSLN MALSKIKTYS ILATPPSSRL DVRTSVREWD
EKVIKEAIMR ELRRGGQTFY IHNHIADIEQ TANELRKILP KLRILILHSK INAKVAEDEM
MKFERGEYDL LLCTSIVESG IHLPNANTII VENANKFGMA DLHQLRGRVG RSDKQAYCYF
LVEDKDAISK DALKRLVALE GNSFLGAGSV LAYHDLEIRG GGNIIGEAQS GHIEAIGYSL
YLKMLEDEIN KLLNQDSAKL DKIDLKLGVS AFLNQEFIRE DRLRLEIYRR LSKCKEVSEV
YEIQSELEDR FGKIDTFTKQ FLDLIIIKIL ALKAGIKTIS NSEQNILITK NDDEKIRLKS
RSKDDDDVLA EILVYLRKDK R
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