| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcE24377A_0536 |
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| Symbol | |
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| ID | 5588669 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli E24377A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009801 |
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| Strand | + |
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| Start bp | 558205 |
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| End bp | 562494 |
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| Gene Length | 4290 bp |
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| Protein Length | 1429 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640924259 |
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| Product | RhsD protein precursor |
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| Protein accession | YP_001461686 |
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| Protein GI | 157157827 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGGAA AACCAGCGGC GCGTCAGGGA GATATGACTC AGTATGGCGG TCCCATTGTC
CAGGGTTCGG CAGGTGTAAG AATTGGCGCG CCAACTGGCG TGGCGTGCTC GGTGTGTCCG
GGCGGGATGA CTTCGGGCAA CCCGGTAAAT CCGCTGCTGG GGGCGAAGGT GCTGCCCGGC
GAGACGGACC TTGCGCTGCC CGGCCCGCTG CCGTTCATTC TCTCCCGCAC CTACAGCAGC
TACCGGACGA AGACGCCTGC ACCGGTGGGG ATTTTTGGCC CCGGCTGGAA AGCGCCTTCT
GATATCCGCT TACAGATACG CGATGATGCA CTGGTACTCA ACGACAACGG CGGACGGAGC
ATTCACTTTG AGCCGCTGCT GCCGGGTGAG GCGGTGTACA GCCGCAGCGA GTCCCTGTGG
CTGGTGCGTG GCGGTAAGGC AACGCAGCCG GACGGCCATA CGCTGGCACG GCTGTGGGCG
TCGCTGCCGC CGGATATCCG GTTAAGCCCG CATCTTTACC TGGCGACCAA CAGCGCACAG
GGGCCGTGGT GGATACTGGG GTGGTCAGAG CTGGTGCCGG GTGCTGAGGA CGTACTGCCA
GCGCCGCTGC CGCCGTACCG GGTGCTTACC GGGCTGGCAG ACCGCTTCGG GCGGACGCTG
ACGTACCGGC GTGAGGCCGC CGGTGACCTG GCCGGGGAAA TCACCGGCGT GACGGACGGT
GCCGGGCGGG AGTTCCGTCT GGTGCTGACC ACGCAGGCGC AGCGTGCGGA AGAGGCCCGT
AAACAGCGCA CCGCTTCCTT ATCTTCCCCT GACACACCCC GCCCTCTCTC AGCCTCAGCG
TTCCCCGACA CACTGCCCGG TACCGAATAC GGCCCCGACA GGGGCATCCG TCTTTCGGCG
GTGTGGCTGA TGCACGACCC GGCATACCCG GAAAGCCTGC CCGGTGCGCC ACTGGCGCGG
TACACGTATA CGGAAGCCGG TGAACTGCTG GCGGTATATG ACCGCAGCAA TACGCAGGTG
CGCGCTTTCA CGTATGACGC GCAGCACCCG GGCCGGATGG TGGCGCACCG TTACGCGGGA
AGGCCGGAGA TGCGCTACCG CTACGACGAT ACGGGGCGGG TGGTGGAGCA ACTGAACCCG
GCAGGGTTAA GCTACCGCTA TCTTTATGAG CAGGACCGCA TCACCGTCAC CGACAGCCTG
AACCGGCGTG AGGTGCTGCA TACAGAGGGC GGGGCCGGGC TGAAACGGGT GGTGAAAAAA
GAACTGGCGG ACGGCAGCGT CACGCACAGC GGGTATGACG CGGCAGGAAG GCTAACGGCG
CAGACGGACG CGGCGGGACG GCGGACAGAG TACGGTCTGA ATGTGGTGTC CGGCGATATC
ACGGACATCA CCACACCGGA CGGGCGGGAG ACGAAATTTT ACTATAACGA CGGGAACCAG
CTGACGGCGG TGGTGTCCCC GGACGGGCTG GAGAGCCGCC GGGCATATGA TGAACCGGGC
AGGCTGGTAT CGGAGACATC GCGCAGCGGG GAGACAGTAC GCTACCGCTA CGATGACGCG
CACAGTGAGT TACCGGCCAC GACAACAGAT GCGACGGGCA GCACCCGGCA GATGACCTGG
AGCCGCTACG GGCAGTTGCT GGCGTTCACC GACTGCTCGG GCTACCAGAC CCGTTATGAA
TACGACCGCT TCGGCCAGAT GACGGCGGTC CACCGCGAGG AAGGCATCAG CCTTTACCGC
CGCTATGACA ACCGTGGCCG GTTAACCTCG GTGAAAGACG CACAGGGCCG TGAAACGCGG
TATGAATACA ACGCCGCAGG CGACCTGACT GCCGTTATCA CCCCGGACGG CAACCGGAGC
GAGACACAGT ACGATGCGTG GGGAAAGGCG GTCAGCACCA CGCAGGGCGG GCTGACGCGC
AGTATGGAGT ACGATGCTGC CGGACGTGTC ATCAGCCTGA CCAACGAGAA CGGCAGCCAC
AGCGTCTTCA GTTACGATGC GCTGGACCGG CTGGTACAGC AGGGCGGCTT TGACGGGCGG
ACGCAACGTT ATCATTATGA CCTGACCGGA AAACTCACGC AGAGTGAAGA TGAGGGGCTT
GTCACCCTCT GGCACTACGA TGCGTCGGAC CGCATCACGC ACCGGACGGT GAACGGCGAC
CCGGCAGAGC AGTGGCAGTA TGACGGCCAC GGCTGGCTGA GAGAAATCAG CCACCTGAGC
GAAGGCCACC GTGTCGCTGT CCACTACGGC TACGACGATA AGGGCCGCCT GACGGGCGAA
CGGCAGACGG TGGAGAACCC GGAGACGGGG GAACTGCTGT GGCAGCATGA GACGAAACAC
GCATACAACG AACAGGGGCT GGCAAACCGC GTCACGCCGG ACAGCCTGCC GCCGGTGGAG
TGGCTGACCT ACGGCAGCGG TTACCTGGCG GGCATGAAGC TGGGCGGGAC GCCGCTGGTC
GAGTATACGC GGGACAGGCT GCACCGGGAG ACGGTGCGCA GCTTCGGCAG CAGGGCAGGC
AGTAATGCCG CATATGAACT GACCAGCACA TACACCCCCG CAGGCCAGTT ACAGAGCCAG
CACCTGAACA GCCTGGTGTA TGACCGTGAC TACGGGTGGA ATGACAACGG CGACCTGGTG
CGCATCAGCG GCCCGCGACA GACGCGGGAA TACGGCTACA GTGCCACGGG CAGGCTGGAG
AGCGTGCGCA CCCTCGCACC GGACCTGGAC ATCCGCATCC CGTATGCCAC GGACCCGGCG
GGCAACCGGC TGCCGGACCC GGAGCTGCAC CCGGACAGTA CCCTCACAGT GTGGCCGGAT
AACCGCATCG CGAAGGATGC GCACTATGTT TACCACTACG ATGAATACGG CAGACTGACG
GAGAAGACGG ACCGCATCCC GGCGGGTGTG ATACGGACGG ACGACGAGCG CACCCATCAC
TACCATTACG ACAGCCTGCA CCGCCTGGTC CATTACATCC GTATCCAATA TGAGGAGCCG
CTGGTCGAGA GCCGATACCT TTACGACCCG CTGGGTCGCC GGACAGGGAA ACGGGTGTGG
CGTCGCGAGC GTGACCTGAC GGGATGGATG TCGCTGTCGC GGAAACCGGA GGTGACGTGG
TACGGGTGGG ACGGCGACCG GCTGACGACG GTACAGACCG ACACCACGCG TATCCAGACG
GTATATCAGC CGGGGAGCTT CGCGCCGCTC ATTCGCATCG AAACAGACAA CGGCGAGCGG
GAGAAAGCGC AGCGCCGCAG CCTGGCGGAG AAGCTGCAGC AGGAAGGGAG CGAGGACGGG
CACGGCGTGG TATTTCCGGC TGAACTGGTG CGGCTGCTGG ACAGACTGGA GGAAGAAATC
CGGGCAGACC GCGTGAGCAG TGAAAGCCGG GCGTGGCTTG CGCAGTGCGG GCTGACGGTG
GAGCAACTGG CCAGACAGGT GGAGCCGGAA TACACACCGG CGCGAAAAGC TCATCTTTAT
CACTGCGACC ACCGGGGACT GCCGCTGGCG CTTATCAGCG AAGACGGCAA TACGGCGTGG
AGCGCGGAAT ATGATGAATG GGGCAACCAG CTTAATGAGG AGAACCCGCA TCATGTGTAT
CAGCCGTACC GTCTGCCAGG GCAGCAGCAT GATGAGGAAT CAGGGCTGTA CTATAACCGT
CACCGGTACT ACGATCCGTT GCAGGGGCGG TATATTACTC AGGACCCGAT GGGGTTGAAA
GGGGGATGGA ATTTATATCA GTATCCTTTA AATCCACTAC AACAAATTGA CCCTATGGGA
TTATTGCAGA CTTGGGATGA TGCCAGATCT GGAGCATGTA CGGGGGGAGT TTGTGGTGTT
CTTTCACGTA TAATAGGACC AAGTAAATTT GATAGTACTG CAGATGCTGC GTTAGATGCT
TTGAAAGAAA CGCAGAATAG ATCTCTATGT AATGATATGG AATACTCTGG TATTGTCTGT
AAAGATACTA ATGGAAAATA TTTTGCATCT AAGGCAGAAA CTGATAATTT AAGAAAGGAG
TCATATCCTC TGAAAAGAAA ATGTCCCACA GGTACAGATA GAGTTGCTGC TTATCATACT
CACGGTGCAG ATAGTCATGG CGATTATGTT GATGAATTTT TTTCAAGTAG CGATAAAAAT
CTTGTAAGAA GTAAAGATAA TAATCTTGAA GCATTTTATC TCGCAACACC TGATGGACGA
TTTGAGGCGC TTAATAATAA AGGAGAATAT ATTTTTATCA GAAATAGTGT CCCGGGATTG
AGTTCAGTAT GCATACCGTA TCATGATTAA
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| Protein sequence | MSGKPAARQG DMTQYGGPIV QGSAGVRIGA PTGVACSVCP GGMTSGNPVN PLLGAKVLPG
ETDLALPGPL PFILSRTYSS YRTKTPAPVG IFGPGWKAPS DIRLQIRDDA LVLNDNGGRS
IHFEPLLPGE AVYSRSESLW LVRGGKATQP DGHTLARLWA SLPPDIRLSP HLYLATNSAQ
GPWWILGWSE LVPGAEDVLP APLPPYRVLT GLADRFGRTL TYRREAAGDL AGEITGVTDG
AGREFRLVLT TQAQRAEEAR KQRTASLSSP DTPRPLSASA FPDTLPGTEY GPDRGIRLSA
VWLMHDPAYP ESLPGAPLAR YTYTEAGELL AVYDRSNTQV RAFTYDAQHP GRMVAHRYAG
RPEMRYRYDD TGRVVEQLNP AGLSYRYLYE QDRITVTDSL NRREVLHTEG GAGLKRVVKK
ELADGSVTHS GYDAAGRLTA QTDAAGRRTE YGLNVVSGDI TDITTPDGRE TKFYYNDGNQ
LTAVVSPDGL ESRRAYDEPG RLVSETSRSG ETVRYRYDDA HSELPATTTD ATGSTRQMTW
SRYGQLLAFT DCSGYQTRYE YDRFGQMTAV HREEGISLYR RYDNRGRLTS VKDAQGRETR
YEYNAAGDLT AVITPDGNRS ETQYDAWGKA VSTTQGGLTR SMEYDAAGRV ISLTNENGSH
SVFSYDALDR LVQQGGFDGR TQRYHYDLTG KLTQSEDEGL VTLWHYDASD RITHRTVNGD
PAEQWQYDGH GWLREISHLS EGHRVAVHYG YDDKGRLTGE RQTVENPETG ELLWQHETKH
AYNEQGLANR VTPDSLPPVE WLTYGSGYLA GMKLGGTPLV EYTRDRLHRE TVRSFGSRAG
SNAAYELTST YTPAGQLQSQ HLNSLVYDRD YGWNDNGDLV RISGPRQTRE YGYSATGRLE
SVRTLAPDLD IRIPYATDPA GNRLPDPELH PDSTLTVWPD NRIAKDAHYV YHYDEYGRLT
EKTDRIPAGV IRTDDERTHH YHYDSLHRLV HYIRIQYEEP LVESRYLYDP LGRRTGKRVW
RRERDLTGWM SLSRKPEVTW YGWDGDRLTT VQTDTTRIQT VYQPGSFAPL IRIETDNGER
EKAQRRSLAE KLQQEGSEDG HGVVFPAELV RLLDRLEEEI RADRVSSESR AWLAQCGLTV
EQLARQVEPE YTPARKAHLY HCDHRGLPLA LISEDGNTAW SAEYDEWGNQ LNEENPHHVY
QPYRLPGQQH DEESGLYYNR HRYYDPLQGR YITQDPMGLK GGWNLYQYPL NPLQQIDPMG
LLQTWDDARS GACTGGVCGV LSRIIGPSKF DSTADAALDA LKETQNRSLC NDMEYSGIVC
KDTNGKYFAS KAETDNLRKE SYPLKRKCPT GTDRVAAYHT HGADSHGDYV DEFFSSSDKN
LVRSKDNNLE AFYLATPDGR FEALNNKGEY IFIRNSVPGL SSVCIPYHD
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