| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A3664 |
|---|
| Symbol | rsmD |
|---|
| ID | 5594101 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | + |
|---|
| Start bp | 3650663 |
|---|
| End bp | 3651259 |
|---|
| Gene Length | 597 bp |
|---|
| Protein Length | 198 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640922780 |
|---|
| Product | 16S rRNA m(2)G966-methyltransferase |
|---|
| Protein accession | YP_001460260 |
|---|
| Protein GI | 157162942 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0742] N6-adenine-specific methylase |
|---|
| TIGRFAM ID | [TIGR00095] RNA methyltransferase, RsmD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 67 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC CGAATCATTC CGGCAGCGGC CAAATCCGCA TTATTGGCGG GCAGTGGCGA
GGCCGTAAAC TACCGGTTCC TGATAGCCCA GGTCTGCGCC CCACCACCGA CCGCGTACGC
GAAACGTTAT TTAACTGGCT GGCTCCGGTC ATTGTTGACG CCCAATGTCT GGATTGCTTC
GCCGGAAGCG GCGCGCTGGG GCTGGAAGCG TTATCACGCT ACGCTGCGGA GGCCACGTTG
ATTGAGATGG ATCGTGCAGT TTCTCAGCAG TTAATTAAGA ATCTGGCGAC ACTAAAAGCA
GGCAATGCAC GCGTAGTGAA CAGCAACGCG ATGTCATTCC TGGCGCAAAA AGGCACACCG
TATAATATAG TGTTTGTCGA TCCACCGTTC CGCCGTGGCT TGTTAGAAGA GACGATAAAT
TTACTGGAAG ATAACGGCTG GCTGGCTGAC GAAGCCCTGA TTTATGTCGA AAGCGAAGTC
GAAAACGGTC TGCCCACTGT TCCGGCAAAC TGGTCATTGC ATCGGGAAAA AGTGGCGGGT
CAGGTGGCTT ATCGGCTGTA TCAACGCGAA GCACAAGGAG AAAGTGATGC TGATTAA
|
|---|
| Protein sequence | MKKPNHSGSG QIRIIGGQWR GRKLPVPDSP GLRPTTDRVR ETLFNWLAPV IVDAQCLDCF
AGSGALGLEA LSRYAAEATL IEMDRAVSQQ LIKNLATLKA GNARVVNSNA MSFLAQKGTP
YNIVFVDPPF RRGLLEETIN LLEDNGWLAD EALIYVESEV ENGLPTVPAN WSLHREKVAG
QVAYRLYQRE AQGESDAD
|
|---|
| |