| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A3587 |
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| Symbol | hofQ |
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| ID | 5595509 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli HS |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009800 |
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| Strand | - |
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| Start bp | 3563822 |
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| End bp | 3565060 |
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| Gene Length | 1239 bp |
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| Protein Length | 412 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640922704 |
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| Product | outer membrane porin HofQ |
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| Protein accession | YP_001460185 |
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| Protein GI | 157162867 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00000000000785668 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCAAT GGATAGCCGC ACTACTGTTG ATGCTGATAC CCGGCGTACA AGCGGCAAAG
CCGCAAAAAG TGACGCTGAT GGTGGATGAC GTTCCGGTAG CTCAGGTGTT GCAGGCGCTG
GCTGAACAGG AGAAGTTGAA CCTGGTCGTG TCGCCAGACG TCAGCGGTAC GGTGTCGTTA
CATCTAACAG ATGTTCCCTG GAAGCAGGCA CTACAAACTG TAGTGAAAAG CGCCGGACTG
ATAACGCGCC AGGAGGGCAA CATTCTCTCA GTGCATTCCA TTGCCTGGCA GAATAACAAT
ATCGCCCGCC AGGAGGCGGA GCAGGCGCGG GCGCAGGCAA ATCTGCCGCT GGAAAATCGC
AGTATAACCC TGCAATACGC CGACGCGGGA GAACTGGCGA AAGCGGGGGA GAAGCTATTG
AGTGCCAAAG GGAGTATGAC CGTCGATAAA CGCACCAATC GCCTTTTGCT ACGAGATAAC
AAAACGGCGT TAAGCGCACT TGAACAGTGG GTAGCGCAAA TGGATCTGCC GGTCGGGCAG
GTTGAGCTGT CGGCGCATAT TGTCACCATT AATGAAAAAA GTTTGCGTGA GTTAGGCGTG
AAATGGACGC TGGCCGATGC GCAACACGCT GGTGGCGTTG GGCAAGTCAC CACGCTTGGT
AGCGACCTCT CCGTAGCGAC GGCGACAACG CATGTCGGTT TTAACATTGG GCGCATCAAC
GGACGTTTGC TGGATCTTGA GCTTTCTGCG CTCGAACAAA AACAGCAGCT GGATATTATC
GCTAGTCCGC GTCTGCTGGC CTCACATCTT CAGCCTGCCA GCATTAAACA GGGGAGCGAA
ATTCCATATC AGGTTTCCAG CGGGGAAAGT GGCGCGACGT CGGTGGAATT TAAAGAGGCC
GTCCTGGGGA TGGAGGTCAC GCCCACGGTG TTACAAAAAG GTCGCATCCG GCTGAAATTA
CACATCAGCC AGAACGTTCC GGGGCAGGTG CTACAGCAGG CTGATGGCGA AGTGCTGGCG
ATTGATAAGC AGGAGATCGA AACGCAGGTC GAGGTCAAAA GCGGAGAAAC GTTGGCGCTG
GGCGGCATTT TTACCCGTAA AAATAAATCG GGTCAGGATA GCGTACCGTT GCTTGGCGAC
ATTCCCTTGT TCGGGCAATT ATTTCGTCAT GACGGAAAAG AAGATGAACG ACGCGAGTTA
GTGGTGTTTA TCACGCCACG ACTGGTTTCC AGTGAGTAA
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| Protein sequence | MKQWIAALLL MLIPGVQAAK PQKVTLMVDD VPVAQVLQAL AEQEKLNLVV SPDVSGTVSL
HLTDVPWKQA LQTVVKSAGL ITRQEGNILS VHSIAWQNNN IARQEAEQAR AQANLPLENR
SITLQYADAG ELAKAGEKLL SAKGSMTVDK RTNRLLLRDN KTALSALEQW VAQMDLPVGQ
VELSAHIVTI NEKSLRELGV KWTLADAQHA GGVGQVTTLG SDLSVATATT HVGFNIGRIN
GRLLDLELSA LEQKQQLDII ASPRLLASHL QPASIKQGSE IPYQVSSGES GATSVEFKEA
VLGMEVTPTV LQKGRIRLKL HISQNVPGQV LQQADGEVLA IDKQEIETQV EVKSGETLAL
GGIFTRKNKS GQDSVPLLGD IPLFGQLFRH DGKEDERREL VVFITPRLVS SE
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