Gene EcHS_A1488 details

Gene Information

• Locus tag: EcHS_A1488
• ID: 5591261
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli HS
• Kingdom: Bacteria
• Replicon accession: NC_009800
• Strand: +
• Start bp: 1488585
• End bp: 1494440
• Gene Length: 5856 bp
• Protein Length: 1951 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 640920645
• Product: autotransporter (AT) family porin
• Protein accession: YP_001458201
• Protein GI: 157160883
• TIGRFAM ID: [TIGR01414] outer membrane autotransporter barrel domain

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAAAGGA AAACTCTATT GTCGGCCTGT ATTGCATTAG CTCTGAGTGG TCAGGGTTGG 
GCGGCAGATA TCACAGAGGT AGAAACCACC ACAGGTGAAA AGAAAAATAC CAATGTGACT 
TGTCCGGCAG ACCCAGGAAA ACTCAGTCCG GAAGAGCTTA AACGCTTACC CTCTGAATGC 
TCTCCTTTAG TCGAACAAAA CCTGATGCCA TGGCTTGCCA CAGGCGCTGC TGCGTTAATC 
ACGGCCTTAG CCGTAGTGGA ACTAAACGAC GATGATGATC ATCATCATCG CAACAATTCT 
CCACTCCCAC CGACACCCCC TGATGATGAA TCAGACGACA CTCCAGTTCC CCCAAGTCCT 
GGCGGAGATG AGATAATACC GGACGATCCG GATGATACGC CTACACCTCC CAAACCGATT 
TCGTTTAATA ATGACGTTAT TCTCGATAAA GCAGAAAAAA CGTTAACTAT TCGCGATTCA 
GTTTTTACTT ATACCGAGAA TGCTGACGGG ACTATTTCTC TGCAAGATAG CAATGGTCGT 
AAGGCAACGA TTAATCTTTG GCAGATTGAT GAAGCGAATA ACACTGTTGC CCTTGAAGGG 
GTGAGCGCAG ATGGCGCAAC GAAGTGGCAA TATAATCATA AAGGTGAGCT TGTTATTACG 
GGTGATAATG CCACAGTAAA CAACAATGGC AAAACCACCG TTGACGGCAA GGATTCCACC 
GGTACGGAAA TCAACGGTAA TAACGGGAAA GTGATTCAGG ACGGCGATCT GGATGTCAGC 
GGCGGCGGTC ACGGTATTGA TATCACCGGT GACAGCGCGA CGGTAGATAA CAAGGGCACC 
ATGACCGTTA CCGATCCGGA GTCCATCGGT ATCCAGATTG ACGGCGACAA GGCGGTTGTT 
AATAACGAAG GCGAGAGCAC CATCACCAAC GGCGGCACCG GCACGCAGAT TAACGGTGAC 
GACGCCACGG CGAATAACAG CGGCAAAACC ACCGTTGACG GCAAGGATTC CACTGGCACG 
GAAATCAACG GTAATAACGG GAAAGTTATC CAGGACGGCG ATCTGGATGT CAGCGGCGGC 
GGTCACGGTA TTGATATCAC CGGTGACAGC GCGACGGTAG ATAACAAGGG CACCATGACC 
GTTACCGATC CGGAGTCCAT CGGTATCCAG ATTGACGGCG ACAAGGCGGT TGTTAATAAC 
GAAGGCGAGA GCACCATCAC CAACGGTGGC ACCGGCACGC AGATTAACGG TGATGACGCC 
ACGGCAAACA ACAACGGCAA AACCACCGTT GACGGCAAGG ATTCCACCGG TACGGAAATT 
GCTGGCAATA ACGGGAAGGT GATTCAGGAC GGCGATCTGG ATGTCAGCGG CGGCGGTCAC 
GGTATTGATA TCACCGGCGA CAGCGCAACG GTGGATAACA AGGGCACCAT GACCGTCACC 
GATCCGGAGT CCATCGGTAT CCAGGTTGAC GGCGACCAGG CCATCGTCAA TAACGAAGGC 
GAGAGCACTA TCACCAATGG CGGCACCGGC ACTCAGATCA ACGGTAACGA CGCCACCGCG 
AATAACAGTG GAAAAACCAC TGTTGATGGA AAAGATTCCA CGGGTACCAA AATCGCGGGC 
AATATCGGCA TTGTAAATCT GGATGGTAGC CTGACTGTTA CAGGCGGTGC GCATGGTGTT 
GAGAACATTG GTGACAACGG CACGGTTAAC AACAAAGGAG ATATTGTTGT TTCCGATACT 
GGATCGATTG GCGTGCTCAT CAACGGTGAG GGGGCAACAG TATCCAATAC GGGTGATGTT 
AACGTTAGCA ATGAAGCGAC AGGGTTCAGC ATCACAACCA ACAGTGGGAA GGTTTCGCTG 
GCAGGCAGTA TGCAGGTTGG CGATTTCTCG ACCGGGGTAG ATCTTAATGG CAACAATAAC 
AGCGTGACGC TGGCGGCAAA AGATCTAAAA GTGGTCGGGC AGAAAGCGAC GGGCATAAAC 
GTTTCTGGCG ATGCGAATAC AGTGAATATC ACTGGTAACG TTCTGGTTGA TAAGGATAAA 
ACCGCAGACA ATGCGGCGGA ATATTTCTTC GATCCATCCG TGGGTATCAA CGTTTACGGC 
AGTGATAATA ACGTGACGCT GGATGGAAAG TTAACTGTTG TATCAGACAG TGAGGTTACT 
TCTCGTCAGA GTAATTTATT TGATGGCAGC GCAGAGAAAA CGTCAGGTCT GGTTGTGATT 
GGCGATGGCA ATACCGTTAA TATGAATGGT GGACTTGAAC TGATTGGAGA GAAAAACGCG 
CTTGCAGATG GGTCGCAGGT TGCTTCCTTG CGCACAGGAT ATAGTTATAC CAGCGTTATT 
GTCGTTAGTG GTGAGTCGTC GGTATATCTG AATGGAGATA CGACAATCAG CGGAGAATTC 
CCTCTGGGGT TTGCCGGGGT TATTCGGGTA CAGGATAAAG CTTTGCTGGA AATTGGCAGT 
GGCGCTACGC TAACAATGCA GGATATTGAC AGTTTTGAAC ATCATGGGAC AAGAACCCCA 
GAACTTACTT ATGCTGATTC CGGTGCGAAA ATTGTTAATA AAGGTACTGT TGAAATTCAG 
AATTTAGGTT TTGCTTTTGT TACTGGTGAA AATACAACAG GTATAAATAG TGGCACGATC 
TCGTTATTAC AAAATGGTAA AGATCCGGCA CCGTCTCCCA TTGTTTTACT GGCTACTAAC 
GGAGGGAGCG CCACTAATGC AGGTACGATC ACAGGTAAAG TGACGGAACG ACATAGCGTA 
TTTAACAAGT ATTCAACGGG CACATCGAAT TCATTTATTT TTAATAACGA TGTCAGTAGC 
ATAACAGGGT TAGTCGCTCA ATCGAATAGC ACAATTATCA ATACTGACAG CGGCATCATT 
GATTTGTATG GTCGTGGTAG TGTCGGCATG CTTGCTATAG CAGATTCAAC AGCAGAAAAT 
CAGGGTAAAA TTACACTGGA TTCTATGTGG GTAGATGCAA ATGACACTAC CGCAATGCGA 
GATATAGCTA GCAACAGCGC CATTGACTTC GGTACAGGTG TGGGAGTTGG TACTGATAGT 
TATAGTGGTG CAGGGAAAAA TGCAACAGCA ATTAACCAAT TGGGCGGTGT TATAACTATT 
TATAACGCCG GCGCAGGTAT GGCGGCCTAT GGCGCCAGCA ATACAGTTAT TAACCAGGGG 
ACGATTAACC TCGAAAAAAA TGGTAATTAT GACGATAGTC TGGCAGCAAA TACTCTGGTA 
GGGATGGCTG TTTATGAGCA TGGTACTGCT ATCAACGACC AGACGGGTGT TATCAATATC 
AATGTTGGTA CTAGTCAGGC GTTTTATAAC GATGGCACAG GAACAATTGT TAACTATGGT 
ACAATCTGCA CTTTCGGCGT GTGCCAATCG GGGAATGAGT ACAATAACAC AGATGATTTC 
ACCTCACTGA TCTATACCGG TGGCGATACG ATTACACGAA GCGGAGAAAC TGTAACGCTA 
AATAATGCCG GAGAAATGAC TGCGCAAATT ACCATGAATG CTGGTGCTGA TAGTTCGTTA 
GTGAACAACA CCGGAACTAT CAATAAAATC GTGCAGAACG CGGGGGTATT CAATAATAGT 
GGCAGTGTAA CAGGGCGGAT GATGTCGGCT GGCGGGGTCT TTAATAATCA AACTGACGGG 
GCGATTATGA GAGGTGCTGC GCTGACAGGT ACTGCAGTGG CAAATAACGA AGGAACCTGG 
AACCTCGGAA GTAGCAGTGA GGGTAACAAC ACCGGGATGC TGGAAGTTAA TAATAATTCT 
GCTTTCAATA ACCGCGGCGA GTTTATTCTT GATAACGACA AGAATGCTGT GCACATCAAC 
CAGTCCGGTA CGCTTTATAA TACCGGTCAC ATGAACATCA GTAATTCTTC CCACAACGGA 
GCCGTTAATA TGTGGGGCGG AAATGGTCGT TTTATCAATG ACGGAACGAT TGATGTTTCT 
GCGAAGTCAC TGGTAGTCAG CGCTAATAAT GCCGGCGATC AGAATGCCTT CTTCTGGAAC 
CAGGATAACG GGGTCATCAA CTTCGATCAC GACAGCGCCA GTGCCGTGAA AGCCACCCAC 
AGCAACTTTA TTGCCCAGAA TGACGGCATC ATGAACATCA GCGGCACCGG TGCTGTGGCT 
ATGGAAGGTG ATAAGAACGC GCAGCTGGTT AACAATGGCA CCATCAACCT CGGTACCGCA 
GGCACTACTG ACACGGATAT GATCGGTATG CAACTCAATG CCAACGCCAC GGCGGATGCG 
GTGATCGAGA ACAACGGCAC CATCAATATC TTCGCTAATA ACTCGTTTGC ATTTAGCGTA 
CTGGGTACAG TAGGTCATGT GGTTAACAAC GGCACGGTGG TGATTGCCGA TGGGGTTACG 
GGTTCTGGCC TGATCAAGCA GGGCGACAGC ATCAATGTTG AAGGTATGAA CGGTAACAAC 
GGTAATAGCA GCGAAGTGCA TTATGGCGAC TATACGTTGC CGGATGTGCC GAAGCCCAAT 
ACGGTTAGTG TAACGTCGGG AAGTGATGAG GCTGGTGGCA GCATGAACAA CCTCAACGGC 
TATGTCGTCG GTACCAACGT TAACGGCAGC GCCGGGAAGC TGAAGGTTAA CAATGCCAGC 
ATGAACGGCG TGGAGATTAA CACGGGCTTT ACCGCTGGTA CGGCAGACAC CATTGTGAGT 
TTTGATAACG TAGTGGAAGG TAGCAACCTG ACCGACGCTG ACGCCATCAC CTCAACGTCC 
GTGGTATGGA CTGCCAAAGG CAGCACCGAT GCCAGCGGTA ACGTTGACGT CACCATGAGC 
AAAAACGCTT ATACCGATGT GGCAACAGAT GCCTCGGTGA ATGACATCGC GAAAGCACTG 
GATGCGGGTT ACACCAACAA CGAACTGTTT ACCAGCCTGA ACGTCGGCAC GACTGCTGAA 
CTGAACAGTG CTCTGAAACA GGTCAGCGGT AGCCAGGCGA CCACGGTATT CCGCGAAGCG 
CGCGTGTTAA GCAACCGCTT TAGTATGCTG GCAGATGCCG CGCCGAAAGT GGGTAACGGT 
CTGGCGTTCA ACGTTGTCGC GAAAGGCGAT CCGCGTGCCG AGTTAGGTAA TAATACCGAA 
TACGACATGC TGGCATTGCG TAAAACTATC GACCTGAGCG AAAGCCAGAC GATGAGTCTG 
GAGTACGGTA TCGCTCGTCT CGATGGTGAT GGTGCGCAGA AAGCGGGTGA TAATGGCGTT 
ACAGGCGGTT ATAGCCAGTT CTTTGGCCTG AAACATCAGA TGTCGTTCGA TAACGGCATG 
AACTGGAATA ACGCCTTGCG TTACGACGTT CACAACCTTG ACAGCAGCCG CTCGATTGCA 
TTTGGCAACA CGAACAAAAC GGCTGATACC GACGTGAAAC AGCAGTACCT GGAGTTCCGC 
AGCGAAGGGG CGAAGACTTT CGAACCGAGC GAAGGACTGA AGGTTACGCC ATATGCGGGT 
GTAAAACTGC GTCACACACT GGAAGGTGGC TATCAGGAGC GCAATGCCGG AGACTTTAAC 
CTGAATATGA ACAGTGGCAG CGAAACGGCG GTGGACAGCA TCGTCGGGCT GAAACTGGAC 
TACGCAGGTA AAGACGGCTG GAGCGCTAGC GCTACGCTGG AAGGCGGGCC GAACCTGAGC 
TACGCGAAGA GCCAGCGTAC GGCAAGCCTG GCAGGCGCAG GTAGTCAGCA CTTTAACGTC 
GATGACGGTC AGAAGGGCGG CGGCATCAAT AGCCTGACAA GCGTCGGCGT GAAGTACAGC 
AGCAAAGAAA GTTCGCTGAA TCTGGATGCG TACAACTGGA AAGAGGATGG CATCAGCGAT 
AAAGGCGTGA TGCTGAACTT CAAGAAAACG TTCTAA 

 

Protein sequence

MQRKTLLSAC IALALSGQGW AADITEVETT TGEKKNTNVT CPADPGKLSP EELKRLPSEC 
SPLVEQNLMP WLATGAAALI TALAVVELND DDDHHHRNNS PLPPTPPDDE SDDTPVPPSP 
GGDEIIPDDP DDTPTPPKPI SFNNDVILDK AEKTLTIRDS VFTYTENADG TISLQDSNGR 
KATINLWQID EANNTVALEG VSADGATKWQ YNHKGELVIT GDNATVNNNG KTTVDGKDST 
GTEINGNNGK VIQDGDLDVS GGGHGIDITG DSATVDNKGT MTVTDPESIG IQIDGDKAVV 
NNEGESTITN GGTGTQINGD DATANNSGKT TVDGKDSTGT EINGNNGKVI QDGDLDVSGG 
GHGIDITGDS ATVDNKGTMT VTDPESIGIQ IDGDKAVVNN EGESTITNGG TGTQINGDDA 
TANNNGKTTV DGKDSTGTEI AGNNGKVIQD GDLDVSGGGH GIDITGDSAT VDNKGTMTVT 
DPESIGIQVD GDQAIVNNEG ESTITNGGTG TQINGNDATA NNSGKTTVDG KDSTGTKIAG 
NIGIVNLDGS LTVTGGAHGV ENIGDNGTVN NKGDIVVSDT GSIGVLINGE GATVSNTGDV 
NVSNEATGFS ITTNSGKVSL AGSMQVGDFS TGVDLNGNNN SVTLAAKDLK VVGQKATGIN 
VSGDANTVNI TGNVLVDKDK TADNAAEYFF DPSVGINVYG SDNNVTLDGK LTVVSDSEVT 
SRQSNLFDGS AEKTSGLVVI GDGNTVNMNG GLELIGEKNA LADGSQVASL RTGYSYTSVI 
VVSGESSVYL NGDTTISGEF PLGFAGVIRV QDKALLEIGS GATLTMQDID SFEHHGTRTP 
ELTYADSGAK IVNKGTVEIQ NLGFAFVTGE NTTGINSGTI SLLQNGKDPA PSPIVLLATN 
GGSATNAGTI TGKVTERHSV FNKYSTGTSN SFIFNNDVSS ITGLVAQSNS TIINTDSGII 
DLYGRGSVGM LAIADSTAEN QGKITLDSMW VDANDTTAMR DIASNSAIDF GTGVGVGTDS 
YSGAGKNATA INQLGGVITI YNAGAGMAAY GASNTVINQG TINLEKNGNY DDSLAANTLV 
GMAVYEHGTA INDQTGVINI NVGTSQAFYN DGTGTIVNYG TICTFGVCQS GNEYNNTDDF 
TSLIYTGGDT ITRSGETVTL NNAGEMTAQI TMNAGADSSL VNNTGTINKI VQNAGVFNNS 
GSVTGRMMSA GGVFNNQTDG AIMRGAALTG TAVANNEGTW NLGSSSEGNN TGMLEVNNNS 
AFNNRGEFIL DNDKNAVHIN QSGTLYNTGH MNISNSSHNG AVNMWGGNGR FINDGTIDVS 
AKSLVVSANN AGDQNAFFWN QDNGVINFDH DSASAVKATH SNFIAQNDGI MNISGTGAVA 
MEGDKNAQLV NNGTINLGTA GTTDTDMIGM QLNANATADA VIENNGTINI FANNSFAFSV 
LGTVGHVVNN GTVVIADGVT GSGLIKQGDS INVEGMNGNN GNSSEVHYGD YTLPDVPKPN 
TVSVTSGSDE AGGSMNNLNG YVVGTNVNGS AGKLKVNNAS MNGVEINTGF TAGTADTIVS 
FDNVVEGSNL TDADAITSTS VVWTAKGSTD ASGNVDVTMS KNAYTDVATD ASVNDIAKAL 
DAGYTNNELF TSLNVGTTAE LNSALKQVSG SQATTVFREA RVLSNRFSML ADAAPKVGNG 
LAFNVVAKGD PRAELGNNTE YDMLALRKTI DLSESQTMSL EYGIARLDGD GAQKAGDNGV 
TGGYSQFFGL KHQMSFDNGM NWNNALRYDV HNLDSSRSIA FGNTNKTADT DVKQQYLEFR 
SEGAKTFEPS EGLKVTPYAG VKLRHTLEGG YQERNAGDFN LNMNSGSETA VDSIVGLKLD 
YAGKDGWSAS ATLEGGPNLS YAKSQRTASL AGAGSQHFNV DDGQKGGGIN SLTSVGVKYS 
SKESSLNLDA YNWKEDGISD KGVMLNFKKT F