| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcE24377A_E0076 |
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| Symbol | |
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| ID | 5585842 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli E24377A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009790 |
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| Strand | + |
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| Start bp | 69460 |
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| End bp | 71505 |
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| Gene Length | 2046 bp |
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| Protein Length | 681 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640913961 |
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| Product | putative type IV conjugative transfer system coupling protein TraD |
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| Protein accession | YP_001451611 |
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| Protein GI | 157149556 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | [TIGR02759] type IV conjugative transfer system coupling protein TraD |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCTGAAGC AGGAGCTGAT TATTGCTGGT TGCGCCGCGC TGCTGGTCGC CTTTGTGGCC
ACATTCGCCG TGTACTGGTA TATCGGGCGC ACCGGTCGCC AGCAGAGTGA GGATGAAATC
ATCGGGGGCC GCGCTCTCAG TGAGTCACCA AAAGACGTTG CCCGGATGAT GAAAAAACGT
GGGGAAGCAT CCGATATCCG CATCGATGAC CTGCCGCTGA AGCTGGATTC TGAGATACAG
AATATGTCCA TGCACGGTAC TGTATCGACC GGTAAGTCCA CTCTGATGCG CAAGATTATG
AAGCAACTGC GCGACAGGGG GGACCTGGTC ATTATCTACG ACAAGGGCTG TACGTTCATT
GAGGATTTCT ACGATGAATC CCGGGATAAA GTGCTTAATG CGCTGGATGC CCGTTGCCCC
AACTGGGATT TGTGGGAAGA GTGCCGTACG ATTTCCGAAC TGGAGAATGC CAGTGCAACC
TTGATCCCGG CCAGCAGTGG TGAAGATCCG TTCTGGCAGG GCAGTGCGCG TACCATCTTT
GCGGAAGGCG CAGAACGCAT GCGCAGGGAT GAAGACCGCA GCTACAATAA ATTCCTGCGC
ACTCTGCTGG CTATTCAGCT TGATCAACTG AGAACGTTTC TTGCCGGCAC GCCCGCTTCC
ACCCTGGTTG ACGGTAAGAT TGAGAAGACC GCCATTTCCA TCCGCAGCGT GCTGACTAAC
TACGTCAAGG CGATGCGTTA TCTGCAGGGT ATCGACAGGC CCGGACGCGA AAAGTTTACC
ATCCGGGAAT GGATGAAGGG CCAGGCCGAT AAATCGAAAA ATGGCTGGCT CTTTATTACC
TCCGACGAAC AGAACCATGA GTCTCTTAAG CCATTGATTT CACTGTGGCT AAGTATTGCA
GCCACCAGTC TGCTGGCGAT GGGGCCGAAC CGCCAGCGAC GTGTCTGGTT TTTTTATGAC
GAACTGGCTT CTTTGCACAA ATTACCGACT CTGCCACGAA TTATTTCGGA GGCGCGTAAG
TTTGGCGGCT GTTTTGTCCT GGGCTTCCAG AGCTTCGCAC AGCTGGAAGA AATTTACGGC
CCGAAAGCGG CGGCGGCGCT GTTTGACCTG CTGAATACCA AATTCTTCTT CCGCTCCCCG
AGCGCCCAGA TTGCGAAGTT TGTGGAGGAA GATGTCGGTG AAACCTGGCG AAAAAAATTC
AGTGAACAGA CCAGCTTTGG TCATGAACAG GTGCGTGACG GGATTTCTTT TGGCAAGGAA
GAAGAACGCG TCAGTATTGT CAGCTACTCC GATGTGCAGT CCCTGAACGA CCTGCAGTGT
TTTGTCACCC TGCCGGGAAG TTATCCGGTG GTGAAACTGA CAATGAAGTA TGAGGCGATG
GCCGGATTCA CGCAGGAGGG GGCTATCCGC TTTCGTCAGG GTGAGCAGGA GAAAATTGTC
GACCCGCAGT CCATGACGGA GGACCGTCAT ATTGACCTCG CTTATGCCCT GACGGTGTAT
GGTGTGCAGG GAGCCAGCGA GCGTTTTGCC ATTGCCCTGA CCGGCACCGA AGGCGGCAGG
AAGAGAATGG CGTCCCTGGA ATCCACCTAT GTGACGTTGT CACGTGCAAA GGAGCATGTC
CAGGTGTACA CGGACAACCT TGAGGACTGG CAGCAACAGG TCCGGCAGTC TGACGGAGGC
AAAACCGCCC ACGACCTGCT GCACGAGAAA AGTGACCGCG AGTCCGACAC CGGTAACCGC
CTGCTGGCCA CAGCCTCGCG GCTGGATAAA ACGGCGCTGG GCCGCCGGGT GCTGGCGGAA
AACGGTCTGG AGGGTGAGAC GATGGCCCGC TTCATTGCTG CCGGTAAAAA GTACCCGTCA
CCGTATGTGG CCCTGCCAGT CTGGACCCGT CACGGGAAAG AGGCAGGGGC GCTGCTGACG
GAAATTCGTA TTGAGGATGA CGGAATGCGC GTGGTGCTCA GCGAAGAATC CCGGCTGCGT
GGCGGAGAAG ATGCGCAGTT TACTGGCTGG CCTTCCGGGA TGTCGGTCTT GCGTGGTGGC
AACTGA
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| Protein sequence | MLKQELIIAG CAALLVAFVA TFAVYWYIGR TGRQQSEDEI IGGRALSESP KDVARMMKKR
GEASDIRIDD LPLKLDSEIQ NMSMHGTVST GKSTLMRKIM KQLRDRGDLV IIYDKGCTFI
EDFYDESRDK VLNALDARCP NWDLWEECRT ISELENASAT LIPASSGEDP FWQGSARTIF
AEGAERMRRD EDRSYNKFLR TLLAIQLDQL RTFLAGTPAS TLVDGKIEKT AISIRSVLTN
YVKAMRYLQG IDRPGREKFT IREWMKGQAD KSKNGWLFIT SDEQNHESLK PLISLWLSIA
ATSLLAMGPN RQRRVWFFYD ELASLHKLPT LPRIISEARK FGGCFVLGFQ SFAQLEEIYG
PKAAAALFDL LNTKFFFRSP SAQIAKFVEE DVGETWRKKF SEQTSFGHEQ VRDGISFGKE
EERVSIVSYS DVQSLNDLQC FVTLPGSYPV VKLTMKYEAM AGFTQEGAIR FRQGEQEKIV
DPQSMTEDRH IDLAYALTVY GVQGASERFA IALTGTEGGR KRMASLESTY VTLSRAKEHV
QVYTDNLEDW QQQVRQSDGG KTAHDLLHEK SDRESDTGNR LLATASRLDK TALGRRVLAE
NGLEGETMAR FIAAGKKYPS PYVALPVWTR HGKEAGALLT EIRIEDDGMR VVLSEESRLR
GGEDAQFTGW PSGMSVLRGG N
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