| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_05945 |
|---|
| Symbol | |
|---|
| ID | 5558607 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio harveyi ATCC BAA-1116 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009784 |
|---|
| Strand | - |
|---|
| Start bp | 1130865 |
|---|
| End bp | 1134026 |
|---|
| Gene Length | 3162 bp |
|---|
| Protein Length | 1053 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640910419 |
|---|
| Product | chitinase |
|---|
| Protein accession | YP_001448065 |
|---|
| Protein GI | 156977159 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3325] Chitinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTACCTTA GAAACGGGAA AGCAGGAAAG AGTGTATTCA CACTCAGTAC TTTGACTGCA
TCTTGTCTAA TGGCATTCAA CAGCTACGCA GCCGTTGACT GTACACCTCT AGAAGCTTGG
GATTCATCGA AAGTTTATAA TGGTGGTGAC CAAGTTCAGC ACGAAAATAG CGCATATAAA
GCGCGCTACT GGACGCAAAA CAACAACCCT GCTCAGTCAG GTGAATGGGG TGAGTGGGAG
AACCTTGGCG CTTGTGATGG CGGCCCTGTT GATCCACCAC TTAACGAAGT ACCGACTGTT
TCACTAACTT CTCCTTCTGC ATCGGCTTCT ATCACCACTG GTGACGTTGT TAACCTTGCC
GCAGACGCTG CAGACACTGA CGGCACAGTC AGCAAAGTTG AATTCTTTGT TGATGGCGCA
CTGGTTAGGA CATCAACCGC AGCACCTTTT ACTGCTTCAT GGACGGCGAC AGAGGGTGTT
CACGAGTTCT CAACTAAAGC TTACGACGAC AAAAATGCAG CGAGCACAGT GAGTGCTGTT
ACGCTTACAG TTGCTGCTGG TCAACCTGGT AACGAAGCAC CAACGGTAGG CGCAGCGCTA
TCAGCCACTT CTGTTGAGCT TGGCGGTACG GTAACGGTTT CTGCTACTGC GGCAGACGCG
GATGGTACGG TTGCTAAAGT TGAGTTCTTT GCCGCAGGTG CACTGATTGG TACAGCAACA
GCTGCGCCTT ACGCTGTTGA TTTCACTCCA GCAGCGGCTG GCTCGGTATC GATTTACGCT
AAAGCGACTG ACGATGTTGG TGCAACAACA GATTCTTCCC TTGTATCACT ATCAGTAAAT
GGTGGTGCAG TCACTTCAAA CTGTCGTCCT GATGGCCTTT ACCAAACGGC TGGTGTGGAT
GTACCTTACT GTACGATTTA CGACAAAGAT GGCCGTGAAT TGATGGGGGC CGATCACCCA
CGCCGTGTGA TTGGTTACTT CACAAGCTGG CGTAGTGGTG ATGACCCACA AGCGGCTTAC
CTTGTGAAAG ACATTCCTTG GGATCAGCTA ACTCACATTA ACTACGCGTT TGTGAGCATC
GGTTCAGACG GTAAAGTGAA CGTTGGTGAC GTGACCGATC CAACTAACCC TGCAACTGGT
AAAACTTGGC CGGGTGTAGA AGTAGACCCT GCACTAGGCT TTAAAGGTCA CTTCGGTGCA
CTTGCTACTT ACAAGCAAAA GCATGACGTT AAAACGCTGA TCTCGATCGG TGGTTGGGCT
GAAACAGGTG GTCACTTCGG CGCAGACGGT AATCGTGTTG CGGATGGTGG CTTCTACACG
ATGACAACCA ACGCAGACGG TTCAATTAAC CACGCAGGTA TCGAGAAGTT CGCGACTTCT
GCAGTTGAAA TGATGCGTAC CTACAAATTC GATGGTCTAG ACATCGACTA CGAGTACCCA
ACGTCTATGG CGTGTGCAGG TAACCCTTAC GATAAAGACT TTATGGAACC GCGTCGTCCA
TACCTATGGG CTTCTTACCA AGAGCTAATG AAAGTTCTGC GTGAGAAATT GGATGCAGCA
TCTGCACAAG ATGGTATCCA CTACATGCTG ACTATCGCAG CGCCTTCGTC GGGCTACCTA
CTGCGTGGTA TGGAAACCTT TGATGTTACT AAGTACCTCG ATTACGTGAA CATCATGACT
TACGATTTGC ATGGTGCTTG GAACGATCAC GTTGGTCACA ACGCGGCATT GTTCGATACG
GGTAAAGACT CTGAGCTTGC TCAATGGAAC GTATACGATA CAGCGGCTTA CGGCGGTATT
GGTTACTTGA ACACTGACTG GGCTTACCAT TACTTCCGTG GTTCAATGCC TGCTGGTCGT
ATCAATATTG GTGTGCCTTA CTACACTCGC GGTTGGCAAG GTGTAACTGG TGGTGAAAAT
GGTCTTTGGG GCCGCGCTGC ACTACCTAAC CAATCAGAGT GTGCGCCGGG TACTGGCGAA
GGTGAGAAGA ACAACTGTGG CCACGGCGCT ATCGGTATCG ATAACATGTG GCATGACACT
GACCCTAAAG GCAACGAAAT GGGCGCAGGT TCAAACCCAA TGTGGCACGC GAAGAACCTA
GAGAAAGGTA TTTGGGGTTC TTACGCTCAA GCTTACGGAC TTGACCCTGT AAATGATCCT
TCCGATAAGT TTGTTGGTTC TTACACGCGT AACTACGATG ATGTTGCAGT AGCACCATGG
CTATGGAACG CAGAGAAGAG TGTATTCCTA TCAACAGAAG ACAAAGCGTC TGTTGAAGTG
AAAGCGGACT ACGTTATCGA TAAAGAGATC GGCGGTATCA TGTTCTGGGA ACTAGCAGGT
GACTACAACT GTTACGTACT AGACGCTAAC GGTAACCGTA CTACGATTGA TGCAACTGAA
CAGGCTTGTG CGGCGGGTAA TGGTGAGTAC CACATGGGTA ACACTATGAC TAAAGCGATT
TACGACAAGT TTAAGTCTGC AACACCTTAC GGTAACAAGA TTGTGACAGG TGCTATCCCA
ACAGAGGCTG TTGATATCGC AGTGAGCGTT GGTGGCTTTA AAGTGGGAGA TCAAAACTAC
CCAATCAACC CTAAGATCAC GTTCACAAAC AACACAGGTC AAGCGATTCC TGGTGGTACT
GAATTCCAGT TCGATATTCC TGTATCGGCA CCGGATAACG CGAAAGATCA GTCTGGTGGT
GGCCTAAGCG TGATTGCCTC TGGACATACT CGTGCGAACA ACATTGGTGG TTTGGATGGT
GTAATGCACC GTGTATCTTT CTCGCTACCA GCATGGAAAG ATCTACCAGC GGGTGGCACT
TACGAGCTTG ATATGGTTTA CTACCTACCA ATCTCTGGCC CAGCTAACTA CACGGTGATT
TCTGGTGGTA AAGAGTTTGC GTTCAAGTTT GAGCAACCAG ACCTACCAAT CGGTGACTTA
AACTCTGGCA CTGGTGGTGG CGGTGGTACT GAGCCTGGTA CTTGTGACAC AACTGGCCTT
GTGACTTACC CAGACTTCCC ACAAACGGAC TGGCAAGGTA ACCCAAGCCA CGCTAACCAA
GGTGATAAAG TGATTCACAA TGGTGTGGTA TACCAAGCAA ACTGGTGGAC AGCATCAGAG
CCGGGTAGTG ACGGTAGCTG GTCGACAGTA TGTAACGTCT AA
|
|---|
| Protein sequence | MYLRNGKAGK SVFTLSTLTA SCLMAFNSYA AVDCTPLEAW DSSKVYNGGD QVQHENSAYK
ARYWTQNNNP AQSGEWGEWE NLGACDGGPV DPPLNEVPTV SLTSPSASAS ITTGDVVNLA
ADAADTDGTV SKVEFFVDGA LVRTSTAAPF TASWTATEGV HEFSTKAYDD KNAASTVSAV
TLTVAAGQPG NEAPTVGAAL SATSVELGGT VTVSATAADA DGTVAKVEFF AAGALIGTAT
AAPYAVDFTP AAAGSVSIYA KATDDVGATT DSSLVSLSVN GGAVTSNCRP DGLYQTAGVD
VPYCTIYDKD GRELMGADHP RRVIGYFTSW RSGDDPQAAY LVKDIPWDQL THINYAFVSI
GSDGKVNVGD VTDPTNPATG KTWPGVEVDP ALGFKGHFGA LATYKQKHDV KTLISIGGWA
ETGGHFGADG NRVADGGFYT MTTNADGSIN HAGIEKFATS AVEMMRTYKF DGLDIDYEYP
TSMACAGNPY DKDFMEPRRP YLWASYQELM KVLREKLDAA SAQDGIHYML TIAAPSSGYL
LRGMETFDVT KYLDYVNIMT YDLHGAWNDH VGHNAALFDT GKDSELAQWN VYDTAAYGGI
GYLNTDWAYH YFRGSMPAGR INIGVPYYTR GWQGVTGGEN GLWGRAALPN QSECAPGTGE
GEKNNCGHGA IGIDNMWHDT DPKGNEMGAG SNPMWHAKNL EKGIWGSYAQ AYGLDPVNDP
SDKFVGSYTR NYDDVAVAPW LWNAEKSVFL STEDKASVEV KADYVIDKEI GGIMFWELAG
DYNCYVLDAN GNRTTIDATE QACAAGNGEY HMGNTMTKAI YDKFKSATPY GNKIVTGAIP
TEAVDIAVSV GGFKVGDQNY PINPKITFTN NTGQAIPGGT EFQFDIPVSA PDNAKDQSGG
GLSVIASGHT RANNIGGLDG VMHRVSFSLP AWKDLPAGGT YELDMVYYLP ISGPANYTVI
SGGKEFAFKF EQPDLPIGDL NSGTGGGGGT EPGTCDTTGL VTYPDFPQTD WQGNPSHANQ
GDKVIHNGVV YQANWWTASE PGSDGSWSTV CNV
|
|---|
| |