Gene VIBHAR_05578 details

Gene Information

• Locus tag: VIBHAR_05578
• ID: 5558114
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio harveyi ATCC BAA-1116
• Kingdom: Bacteria
• Replicon accession: NC_009784
• Strand: -
• Start bp: 780119
• End bp: 782071
• Gene Length: 1953 bp
• Protein Length: 650 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 640910054
• Product: hypothetical protein
• Protein accession: YP_001447708
• Protein GI: 156976802
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTTTCACT TTGAAGAGTT CGCTTTTATC AACCGTCTAA AGCTTATACC GTTTAAAACG 
TTACGGTATC TATTTCCGAT TGTGTTTGGC GCGATGTGTT CAACCAGCAG TTTCTCTGCA 
GACCACGCGA ACAAAGAAAG TTACCTCAGA CACCATATCT CGATAAAAGA CGACCCGATG 
TTGGAATTTT ATTTCGACTC TATCGGTAAG CCTCGCTCAA TCAAATCAAA CGACTTCACA 
TTACCCGCGG ACGCCTCTCC GGATTCACAA GCACTTTATT ACTTCGCCCG TATTTATCTT 
GAGCGTTACG AAGGCGTTCC AATTCCAGAG CTCCCTGACC TTGTTGAATT CGGAAAACAA 
CATGATTTGC CTTGGGTGAT TGCAGAAGCA AAGTTAAACC AAGCCGTCGA ACTGATAGAA 
GCAGACGAAG TTTGGCAAGG CGAGCTTCTT CTGCACGATG TCATCAATAT CTCTCGCCAG 
ATTGGCTATA ACTCTCTTCA AGGTCGAGCT TACCGCTGGC TTGGGAATGC AGAGGTTCAA 
CGCGCTCAAG TACAAACCGG TTTAAAACGT TATCGAACCG CTTATGATTT GCTGGAAGGA 
TCTGAGTTTG AAATCCAGAT TGCGATGACA CTCAACAACA TCGCTTCACT TTATATGGAA 
CTGTCGGACT GGGATCGGGC AAAAACCTAT CTCGACCAAG CAATTAATGG CTACTTAAAC 
AGCGATGATA AGTATGACAA CAGCTTGTTC CTTGCCATCA TGTATGCGAA CTTAAGTGTC 
ATTAACTATG GCATGGAAAA GTACGAAGAA TCAGAACGTT ACTTCGAGCA AGCAGCACAA 
CTTTCCATGG CAACGGGCTC AGTCAGAATT AAGCATAACT CCGTTTCTAA CTTATCCCAA 
CTTCTTAGCA CACTGGGTAA GATGGAAGAA TCTTATCAAC TTGCACAGAC ATGTTTAGAA 
CTTCCGAACC CGCAAAACTT AAAAGGCCTA AAAGCCGCCT GCCACGAAGC TTTTGCCGAA 
GCCTACCTTA AGGATGGGAA GTATGAGCAA GCAATTGAGA GTGCAAAAAC TGCATTAGAA 
GACCTAAGTG AAACGGCAAG TGCAGAGACT AAGCAGCAAA TGGACCTGTA TTTAGTACTC 
GCTCGCGCCA ACCAAGAATT AAAACAATTT GAAAAAGCAT TCGATAATTT GGGCCGTTTA 
CGTAATTTAG AAAAAAGCTT TGATAGCCAT GTTCATGGCG ATGAGATGAT CAATATCAAA 
CTCGACTTAG AGGCGAAGCT GGCTCAGAAA GAATTGACCC TGCTCGAAGC GAAGAATGCG 
CTCCAAGCTT CTGAGCTTGA ATCCCAACGC TATCGCGAAA TCTTCTACTT CCTTATTGCG 
GCCGCTATCG GTTTTTGGCT TTTCCGTTAC ATTCGTCAAA TGAACAAGAT CAACGAAGAG 
TTGGCGCAGC AAAATACCAC TGACCCGCTA ACGAAGGTGC ATAATCGTCG CTATCTGCCT 
AGTTGGCTGG ATCAAATGGC GCGTCGAAGC CCTGCTCGTA AGTTTGCCCT TGCCGTTATT 
GACATTGACC ATTTCAAAGC CTTCAATGAC CAGTATGGCC ATGACCTAGG CGATAAAATG 
CTGTTGCACG TTGCACGTAT TCTCGACGAG GCGACACGCG CCGGAGACTT ACTCGTCCGT 
TGGGGTGGCG AAGAGTTTGT GCTGCTGTTC GAAATTAGAC ACGCTGATGA CTGTGCAAAA 
ACGTTAGATC GTTTGAGACT TGCAGTTGAA AACAACAACC TTGAGGTTGA CTCTGAATCG 
CTAGGCGCGA CAATCTCACT CGGCGCAGTT AACGAGCTAA GTGCGCAAAG CATCAAACAG 
GAGTGGGATC AATGGTTCTT TGCCGCTGAC CAAGCTCTGT ACGATGCCAA ACAATCTGGT 
CGAAACCAGT ACCAAATTCA CTCGACGTCA TAG 

 

Protein sequence

MFHFEEFAFI NRLKLIPFKT LRYLFPIVFG AMCSTSSFSA DHANKESYLR HHISIKDDPM 
LEFYFDSIGK PRSIKSNDFT LPADASPDSQ ALYYFARIYL ERYEGVPIPE LPDLVEFGKQ 
HDLPWVIAEA KLNQAVELIE ADEVWQGELL LHDVINISRQ IGYNSLQGRA YRWLGNAEVQ 
RAQVQTGLKR YRTAYDLLEG SEFEIQIAMT LNNIASLYME LSDWDRAKTY LDQAINGYLN 
SDDKYDNSLF LAIMYANLSV INYGMEKYEE SERYFEQAAQ LSMATGSVRI KHNSVSNLSQ 
LLSTLGKMEE SYQLAQTCLE LPNPQNLKGL KAACHEAFAE AYLKDGKYEQ AIESAKTALE 
DLSETASAET KQQMDLYLVL ARANQELKQF EKAFDNLGRL RNLEKSFDSH VHGDEMINIK 
LDLEAKLAQK ELTLLEAKNA LQASELESQR YREIFYFLIA AAIGFWLFRY IRQMNKINEE 
LAQQNTTDPL TKVHNRRYLP SWLDQMARRS PARKFALAVI DIDHFKAFND QYGHDLGDKM 
LLHVARILDE ATRAGDLLVR WGGEEFVLLF EIRHADDCAK TLDRLRLAVE NNNLEVDSES 
LGATISLGAV NELSAQSIKQ EWDQWFFAAD QALYDAKQSG RNQYQIHSTS